Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02723 ATGATCCATCGGTACCCTTCTATTTTTGAACTCTTCACTATACCATGGCCACCTAAGCCACTCAATGCAACAAAGTTATATCCTCAACTATGTGTTCGTCTAACTCCAGCTGCTGCTGCCCTTGCTGCTGAGGAACTCACTCTTCAATCCTCCATTTCCACCACTTTGGCAACCAAACTCCAGAAGCTTCTTATGTTATCATCTCACCACCGGTTACTCCTATCAAAGTTGGTTCACCTTGCTCCAGATCTTGGTCTTCCTCCTAATTTTAGATCCCGTTTGTGCAATGATTTTCCAGATAAATTCAAGACTGTTGAAACTTCCTATGGCCGTGCACTTGAGCTTGTATCTTGGGACTCAAGCTTGGCAAAGCCATTACTGCCTCCTGCATTTCGTTCTCCTGATTTAATAGTTGATCGGCCTTTAAAGTTCAAACAACTAAGACTTAGAAAAGGGCTTAACATAAAGAGACGTCACCAGAGTTTCCTGCTAAAATTTGAAGAAATTCCGGAATTGTGCCCTTATAGGAACCCTGTTGATTCTTTAGCCAAGGTATCATTGGAAGCAGAAAAGAGATCTTGTTCTGTAGTAAGAGAGGTTCTTGGGATGATGATTGAAAAGAGTACTTTAATAGACCACTTGACCCATTTCAGAAAGGAATTTGGTCTCCCAAACAAGTTGAGAGCAATGATTATAAGACATCCGGAATTGTTTTATGTGAGTTTGAAAGGGCAGAGGCACTCTGTTTTCTTGGTAGAGGGGTTTGGTGAGAAAGGTGAGTTATTGGAGAAGGATGAGATATTGTTCTTACGCAATAAATGGAGGGACTTGGTTAGGGAATCGAAGAGAATGAGACGAGAGGGAAGAAGGGGGAGGATTGACAAGTTTTTTGGTGGTTTCAGTGATACTGATGAAAATAATGAGGATGACAGTGATGTTGAATATGATGAAAATTTTGATATTGATAATTTTGAAGATGGTTATGATGATGGTTTTGAGGAAATATTTGAAGACTTGGATTATGAGGCTAAGCATGATGACCATAGTGGTTTGCTTGCCCAAAATATGAATGGCGAATTTTGGACTGCAGGACATTCTCCTATGCAAACTAGGGTGGATGAAGAACAAGTGCAGCCTTGGAGGCTGCTAGGGTTTTTCGCTTCTTCTTCCCCGCATCGCTTCAGGCACTTGTTAAAGACTGAAACGATGTCCCGTGTGTATGTTGGTAATCTGGATTCAAGGGTCACAGAGAGGGACCTTGAAGATGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCAAGGAGGCCGCCTGGTTATGCTTTTATTGACTTTGATGACAGTAGAGATGCGCGTGATGCTATTCGTGAATTGGATGCAGGCAAGAATGGTTGGAGGGTAGAGCTTTCTCACAACTCAAGAGGTGGAGGTGGTGGCCGTGGAGGTGGCCGTGGTCGCTCTGGTGGTTCTGATTTGAAATGCTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGCTTGCGTGGTGGTTCAGGAAGACGTCGTAGCCGCAGCCCACCTCGATTTCGTAGGAGCCCAAGTTATGGTCGGAGAAGTTACAGTCCCCGTGGACGGTCCCCTAGGCGCCGCAGTTTGTCACCTCGTGGACGGAGCTACAGCAGGTCACCTCCTTACCGTGGACGTGAGGAGTTACCATATGCCAATGGAAATGGCATTAGGGAACGTCGCCGAAGCAGAATTCTACTCTTGGATTGGATTAGTTACTTGAATTCTCGGCTTGTGTTGCTTTTATCTATGAAGAAAATTTTTAGTTCCATTGCAGGTTTCTACTGGTACTCTGCTTCATTGCTTTTCTGCTTCTTCGTTCAGTGGATTGTAGTCTCTGGCTGCCCTTCTCTGCAATTTTCGATTTTTGAATGGTTGTGGGTCATAGCTGGCTACATACGCTGCATGCTTGTTTCATTGACTCGCCACTTGCAATGA 1995 0.4441 MIHRYPSIFELFTIPWPPKPLNATKLYPQLCVRLTPAAAALAAEELTLQSSISTTLATKLQKLLMLSSHHRLLLSKLVHLAPDLGLPPNFRSRLCNDFPDKFKTVETSYGRALELVSWDSSLAKPLLPPAFRSPDLIVDRPLKFKQLRLRKGLNIKRRHQSFLLKFEEIPELCPYRNPVDSLAKVSLEAEKRSCSVVREVLGMMIEKSTLIDHLTHFRKEFGLPNKLRAMIIRHPELFYVSLKGQRHSVFLVEGFGEKGELLEKDEILFLRNKWRDLVRESKRMRREGRRGRIDKFFGGFSDTDENNEDDSDVEYDENFDIDNFEDGYDDGFEEIFEDLDYEAKHDDHSGLLAQNMNGEFWTAGHSPMQTRVDEEQVQPWRLLGFFASSSPHRFRHLLKTETMSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDSRDARDAIRELDAGKNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREELPYANGNGIRERRRSRILLLDWISYLNSRLVLLLSMKKIFSSIAGFYWYSASLLFCFFVQWIVVSGCPSLQFSIFEWLWVIAGYIRCMLVSLTRHLQ 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02723 664 Pfam Plant organelle RNA recognition domain 1 283 IPR021099 GO:0003723
Adu06g02723 664 ProSiteProfiles Zinc finger CCHC-type profile. 495 510 IPR001878 GO:0003676|GO:0008270
Adu06g02723 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 404 476 IPR000504 GO:0003723
Adu06g02723 664 SMART c2hcfinal6 495 511 IPR001878 GO:0003676|GO:0008270
Adu06g02723 664 Pfam Zinc knuckle 495 510 IPR001878 GO:0003676|GO:0008270
Adu06g02723 664 Gene3D - 398 476 IPR012677 -
Adu06g02723 664 CDD RRM_SRSF3_like 405 474 - -
Adu06g02723 664 SUPERFAMILY Retrovirus zinc finger-like domains 488 511 IPR036875 GO:0003676|GO:0008270
Adu06g02723 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 406 462 IPR000504 GO:0003723
Adu06g02723 664 MobiDBLite consensus disorder prediction 510 566 - -
Adu06g02723 664 SUPERFAMILY RNA-binding domain, RBD 400 491 IPR035979 GO:0003676
Adu06g02723 664 SMART rrm1_1 405 472 IPR000504 GO:0003723
Adu06g02723 664 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 1 343 IPR045040 GO:0003723
Adu06g02723 664 MobiDBLite consensus disorder prediction 469 491 - -
Adu06g02723 664 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 1 343 - -
Adu06g02723 664 Gene3D - 490 539 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02723 Adu-Chr6 103860038 103866097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02723 401 468 Eukaryotic Initiation Factors Gene Family AT2G36660 36.111 3.64e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02723 - - mtr:MTR_3g083350 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02723 06 103860038 103866097 Adu06g02723 06 103860038 103866097 ECH