Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02606 atgactttggagagtcagctcaactctgcgcaaggtcgggcaactgcggtggagaaggatcgcgacgaggctgtctcgttggccaaggctgctcgggcagaggctgaagaatggaaggggaagcacaaagaggtcgtgaagcaggggaagagcaccatcctgatgactgaagaggctcttaaggctcagGTGGTACAGGAGCCTCAGGCATTTTCTTCTTTCAGAGAGCGGCTTTACCACTTACAGAGAACCGAAAATGAAAGGGTTTGCTTTGGTAGATCAGGCATTCATGGATGGGGACTTTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGTAGCATTGCGGATCTCAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATCTATTTAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGATAAAGGAAATATAGCAAGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTAGGTGATGATGAGAGCCGGATCGCACTCATTGCCAAGACTGATGTAACGGCTGGCGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAGGAAAAAGAGAAGCCAAAAAGTTGCCATAAATTTTCCTTCAGAATTTGTCACTCCTCCAACACCAACGCATTGATGCCATTTCCGGTGTTTTTGGATGCATGGAATGCTCAAGAAATAGACATTACCAGAAGGTTGAGATTTCCCATTCCAAAATCACCTTGTGGTGTGAATAGTGGCCTCTGCTCCCTCTCTCCAACACAGCAGAGAATTTACGGATTTGCAGCTTGTTTGATTGCTGGTCTTGCTTGCATGTTACTGTCAATGATTGTTTTTGCCAAACCCATCAAATTTGCATTATTATTCACCTTTGGAAACGTATTAGCAGTGGGAAGCACAGCCTTTCTTCTTGGACCTGCACAACAACTCGGAATGATGTTTGATACTGCTCGTGTTTTTGCAACAGCCATATACATCGGATGTGTGGTTATAGCACTCATATGTGCGCTCTTGATTCATGACAAGTTGTTGACCATAATTGCTATCATAATTGAGATTGGTGCTCTTATTTGGTACAGCTTAAGCTACATACCTTTTGCTCGAGGAATGGTTTCTGAGTTGATGATTCGATTATGCCACACAGAAATTTGA 1230 0.352 MTLESQLNSAQGRATAVEKDRDEAVSLAKAARAEAEEWKGKHKEVVKQGKSTILMTEEALKAQVVQEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIALIAKTDVTAGDELTYDYLFDPDEPDEFKEKEKPKSCHKFSFRICHSSNTNALMPFPVFLDAWNAQEIDITRRLRFPIPKSPCGVNSGLCSLSPTQQRIYGFAACLIAGLACMLLSMIVFAKPIKFALLFTFGNVLAVGSTAFLLGPAQQLGMMFDTARVFATAIYIGCVVIALICALLIHDKLLTIIAIIIEIGALIWYSLSYIPFARGMVSELMIRLCHTEI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02606 409 Gene3D SET domain 3 234 IPR046341 -
Adu06g02606 409 SUPERFAMILY SET domain 81 209 IPR046341 -
Adu06g02606 409 Coils Coil 28 48 - -
Adu06g02606 409 ProSiteProfiles SET domain profile. 87 204 IPR001214 GO:0005515
Adu06g02606 409 Pfam SET domain 98 203 IPR001214 GO:0005515
Adu06g02606 409 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 48 216 - -
Adu06g02606 409 PANTHER PHD FINGER PROTEINS 48 216 - -
Adu06g02606 409 Pfam Got1/Sft2-like family 284 391 IPR007305 GO:0016192
Adu06g02606 409 SMART set_7 87 210 IPR001214 GO:0005515
Adu06g02606 409 CDD SET_SETD1-like 74 212 - -
Adu06g02606 409 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02606 Adu-Chr6 101811877 101831525 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02606 93 239 C2H2 Transcription Factor Family AT2G23740 35.366 7.26e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Adu06g02606 Got1 1.2e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02606 - - adu:107494970 299.286