Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02602 ATGATAATCAAGCGGAACCTGAAATTCCAAATGCCGAGTCTGAAACGGAAGAGACTCGGTGACTCGGCGGGTGAAGGGGACGAGTCAGCCGCGTCCACTCGTAAGAAGAAGAAGAAAACTACCAACGGGTATTATCCAATTAACATCCTCTGTGGCTTCGCCGCCGGCGTAATTCCCGCGAGTTTTCGCGGGTTACTCGGCGCTGCAGCTGCTGTGTTACCACCGGAGAAGACGTTTTCTAATATGTGCACCACGGAGATATCTTATTCTCGGGGCAAAGTGGAGGTAAATTCGAATTCGAATTCGAATGATTTGAATGAAATTGAAGAAGAGGAAGTTGCAGTGGCGGTTAGAGGGAAGAAGGATAGTAATGTGTCTCGGCCGCCGCTTGTGCGGACTTCGCGGGGGCGAGTTCAGGTGCTGCCTTCGCGCTTCAACGATTCGGTTATGGATGATTGGAGGAAGGATGGTACGAGTGAATTTGAGAGTGTGGAAGAGGCACCAAAGGCTTCTTGCAAGAGAAGAAATGGGGAAAGGAATGGGCAGAAGAGTAAGAGCTATGCCACATTGTGTTTGAACTCGAATTCGCGCGGCTCGATGGCATTGAGGAAGCGTGAGGTGTATCTTGAGGATGTTGGATTTGTGGAGGTGGAGGAAGTTGACATAACAAGGAATGAGGGAGTTCTGAAGGTGGAAGAGGAAGAAGAAGAAGAGGAAGAAGAAGAGAAGAAGAAGAGGAAGAATAAGGAAGAAGGGTTGTATGGACCAGAAGATTTTTATGCAGGTGATATCGTGTGGGCAAAAGCGAGAAAGAAGGAACCGTTTTGGCCTGCCATTGTCATTGATCCTACCACTCAGGCACCTGAACTTGTCTTGAGGACATGCATAGCTGATACGGCTTGTGTCATGTTTCTTGGATACTCAGGGAAAGAAAATGAAAGGGATTATGCATGGGTGAAGTATGGGATGATATTTCCATTTATGGATTATGTAGACAGGTTTCAGGGGCAGTCTGAGTTGAGTTACTGTAATCCATCTGAATTTCAAACTGCAATAGAGGAGGCATTTTTGGCGGATCAGGGATTTACAGAGAAGTTGATAGCAGATATTAATTCATCAGCTATCAACACTACCTACAGTGATTCGGGTGTAAAGAGATTGAAGGAGGTTACTCATGCAAACCAGCATGCTGAGCAACGCTTTCTAAATCTGGATTTAATCAATAAGAAAATAGACACACGGCCTTGTGAAGCATGTGGAGTGAACCTTCCTTTCAAAATGTCGAAAAAAACAAAGAACTCAACTCCTATTCGCCAACTCCTATGCAAAACATGTGTTGGGTTAACAAAATCTAAGCATTATTGTGGCATATGCAAGAAAATTTGGAATCATTCAGACAGTGGAAGCTGGGTACGTTGTGATGGATGTAAAGTGTGGGTGCATGCAGAATGTGACAAAATTTCCGGCAACCTTTTCAAGAATCTTGGAGGCACTGATTATTTCTGCCCTAGTTGCAAAGTGAAGTTTAATTTTGAGTTATCTGATTCCGAAAAATCACAGCCAAAAGTCAAATGGAGCAAAAACAATGGGCAGCTAGTGCTTCCAAAAAGGGTCAATGTTCTATGCAATGGTGTGGAAGGAATCTATCATCCAAGCCTTCACTTAGTTGTTTGCAAGTGTGGTTTTTGTGAGACAGAAAAGCAATCGCTTAGCGAATGGGAACGCCACACAGGTTCCAAATTGAGAAATTGGAGAACAAGTGTTCGGGTGAAAGGCTCCATGCTATCACTGGAACAATGGATGCTGCAATTGGCTGAGTTTCATTCTAATGCCGTAGTTTCTATCAAACCCAAAAAACCTTCCTTAAAAGAAAGGAAGCAGAAGTTGCTTACATTTTTGCAAGAGAAGTATGAACCGGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTTTGCAGATGGGTTGAAGATTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTACGGTGCAAGAAATGTTAGAGACTTCACATCATGGGTGTGTAAAGCTTGTGAAACACCTGAAATTAAACGGGAGTGTTGTCTTTGCCCCGTAAAAGGTGGTGCTCTAAAGCCAACAGATATTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGGCCTGAAGTGGCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTTAGTATTCCGTCAAGTTCTTTTGTTAAGATTTGTGTTATTTGTAAGCAAATTCATGGTTCATGCACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGCTACCGAATGGAGTTGCACATTTCGGAGAAAAATGGTAAACAGACAACAAAAATGGTTTCCTATTGTGCTTATCACAGGGCTCCCAATCCAGACACTGTTTTGATTATGCAAACCCCCCTTGGGGTCATTTCAACTAAAAGTCTTCTACAAACTAAGAAAAAAACGGGTTCCAGGCTAATTTCCTCTAGAAGAACAAAGGTAGAAGAAACCCCTCAAGCAGATGATACTGAACATGAGCCATTCTCTGCCGCTAGATGTCGAATCTTTCAAAGAACAAACTACACCAAAAAGAAATCAGCAGCTGATGCCGTTCCTCATCACGTGAGGGGTCCCTACCATCATCCTTTAGATGCAATACAGAGTTTGAATGCTCCCAAAGTGGTACAGGAGCCTCAGGCATTTTCTTCTTTCAGAGAGCGGCTTTACCACTTACAGAGAACCGAAAATGAAAGGGTTTGCTTTGGTAGATCAGGCATTCATGGATGGGGACTTTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGTAGCATTGCGGATCTCAGGGAGGCACGCTATAGATTAGAAGGGAAAGACTGCTATCTATTTAAGATAAGTGAAGAAGTGGTAGTAGATGCCACTGATAAAGGAAATATAGCAAGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTAGGTGATGATGAGAGCCGGATCGCACTCATTGCCAAGACTGATGTAACGGCTGGCGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTTAAGGTCCCTTGTTTATGCAAAGCTCCGAACTGCCGCAAGTTCATGAATTAG 3246 0.4335 MIIKRNLKFQMPSLKRKRLGDSAGEGDESAASTRKKKKKTTNGYYPINILCGFAAGVIPASFRGLLGAAAAVLPPEKTFSNMCTTEISYSRGKVEVNSNSNSNDLNEIEEEEVAVAVRGKKDSNVSRPPLVRTSRGRVQVLPSRFNDSVMDDWRKDGTSEFESVEEAPKASCKRRNGERNGQKSKSYATLCLNSNSRGSMALRKREVYLEDVGFVEVEEVDITRNEGVLKVEEEEEEEEEEEKKKRKNKEEGLYGPEDFYAGDIVWAKARKKEPFWPAIVIDPTTQAPELVLRTCIADTACVMFLGYSGKENERDYAWVKYGMIFPFMDYVDRFQGQSELSYCNPSEFQTAIEEAFLADQGFTEKLIADINSSAINTTYSDSGVKRLKEVTHANQHAEQRFLNLDLINKKIDTRPCEACGVNLPFKMSKKTKNSTPIRQLLCKTCVGLTKSKHYCGICKKIWNHSDSGSWVRCDGCKVWVHAECDKISGNLFKNLGGTDYFCPSCKVKFNFELSDSEKSQPKVKWSKNNGQLVLPKRVNVLCNGVEGIYHPSLHLVVCKCGFCETEKQSLSEWERHTGSKLRNWRTSVRVKGSMLSLEQWMLQLAEFHSNAVVSIKPKKPSLKERKQKLLTFLQEKYEPVCAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVRDFTSWVCKACETPEIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFRPEVAFASDEKMEPALGILSIPSSSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHISEKNGKQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSRRTKVEETPQADDTEHEPFSAARCRIFQRTNYTKKKSAADAVPHHVRGPYHHPLDAIQSLNAPKVVQEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRLEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIALIAKTDVTAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02602 1081 CDD ePHD_ATX3_4_5_like 703 814 IPR041955 -
Adu06g02602 1081 ProSiteProfiles SET domain profile. 939 1056 IPR001214 GO:0005515
Adu06g02602 1081 MobiDBLite consensus disorder prediction 159 184 - -
Adu06g02602 1081 CDD SET_SETD1-like 926 1077 - -
Adu06g02602 1081 SUPERFAMILY FYVE/PHD zinc finger 647 711 IPR011011 -
Adu06g02602 1081 SMART set_7 939 1062 IPR001214 GO:0005515
Adu06g02602 1081 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1081 - -
Adu06g02602 1081 Pfam PHD-finger 661 695 - -
Adu06g02602 1081 PANTHER PHD FINGER PROTEINS 1 1081 - -
Adu06g02602 1081 SUPERFAMILY SET domain 932 1078 IPR046341 -
Adu06g02602 1081 SUPERFAMILY FYVE/PHD zinc finger 452 512 IPR011011 -
Adu06g02602 1081 MobiDBLite consensus disorder prediction 850 868 - -
Adu06g02602 1081 MobiDBLite consensus disorder prediction 18 38 - -
Adu06g02602 1081 SMART PostSET_3 1065 1081 IPR003616 -
Adu06g02602 1081 Coils Coil 222 253 - -
Adu06g02602 1081 ProSiteProfiles Post-SET domain profile. 1065 1081 IPR003616 -
Adu06g02602 1081 Gene3D SET domain 914 1081 IPR046341 -
Adu06g02602 1081 Pfam PHD-zinc-finger like domain 702 814 - -
Adu06g02602 1081 MobiDBLite consensus disorder prediction 848 868 - -
Adu06g02602 1081 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1081 IPR025780 -
Adu06g02602 1081 Pfam SET domain 950 1055 IPR001214 GO:0005515
Adu06g02602 1081 MobiDBLite consensus disorder prediction 230 249 - -
Adu06g02602 1081 MobiDBLite consensus disorder prediction 18 35 - -
Adu06g02602 1081 CDD PHD_TCF19_like 455 505 - -
Adu06g02602 1081 Pfam PHD-finger 454 507 IPR019787 -
Adu06g02602 1081 SUPERFAMILY Tudor/PWWP/MBT 254 358 - -
Adu06g02602 1081 ProSiteProfiles Zinc finger PHD-type profile. 646 697 IPR019787 -
Adu06g02602 1081 SMART PHD_3 454 506 IPR001965 -
Adu06g02602 1081 SMART PHD_3 759 815 IPR001965 -
Adu06g02602 1081 SMART PHD_3 648 695 IPR001965 -
Adu06g02602 1081 ProSiteProfiles Extended PHD (ePHD) domain profile. 700 815 IPR034732 -
Adu06g02602 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 449 509 IPR013083 -
Adu06g02602 1081 ProSiteProfiles Zinc finger PHD-type profile. 452 508 IPR019787 -
Adu06g02602 1081 ProSitePatterns Zinc finger PHD-type signature. 649 694 IPR019786 -
Adu06g02602 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 698 817 IPR013083 -
Adu06g02602 1081 ProSiteProfiles PWWP domain profile. 261 330 IPR000313 -
Adu06g02602 1081 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 641 697 IPR013083 -
Adu06g02602 1081 CDD PHD_ATX3_4_5_like 648 694 IPR042011 -
Adu06g02602 1081 MobiDBLite consensus disorder prediction 159 181 - -
Adu06g02602 1081 Pfam PWWP domain 262 355 IPR000313 -
Adu06g02602 1081 Gene3D - 256 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02602 Adu-Chr6 101630867 101639389 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02602 649 814 C2H2 Transcription Factor Family AT3G14740 33.908 2.98e-21 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Adu06g02602 zf-HC5HC2H_2 2.4e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02602 - - gmx:100808761 1650.95