Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02600 atgattgctgatgacagtggcgatgatgttggagcaagtgagcctgctggggcgggcggtggttctagctttgacacgcagcagtaccctccacatttttcctctttggacttggatggcatgaggcaggatggggttcctgggcagccggctggatttggtgctagagatgctgaagggtctgcaggtctgacagaatttcagCTTCTAACCCGCCGCTCTCGCGTTCCCCCATTCCTCTGCTTCGTCCCTTCGCCGCCGTCCCTCACTCGTCCAAAGGATTCGGTAAGAGAGATGGGGGCCAAGGCAAAGAAAGCTATGAAGAAGAGTTTGAAGAAGGCTACTTCTACCAAGCCATCATCTTCTTCCATCAACAAATCAGAGGCTTCTGATTATTTGCCCTTGGAAGGTGGTCCTGCTCGCAAGCTCCCTGAACAGAAGCCTTTGGAGAGTGCCGCAACGGTGTTGTATATCGGCCGCATTCCGCATGGGTTTTATGAGGAGGAGATGCAAGGTTTTTTTGGACAATTTGGAACGGTCAAGAGATTGAGAATTGCAAGAAATAAGAAAACAGGAAAATCAAGGCATTTTGGGTTCATCGAATTTCAGTCTCCTGAGGTAGTAGCTAAAGTTGTAGCCGAAACTATGCACAATTATCTGCTTTTCGAACACCTTCTCCAAGTCCACTTGATACCCCCTGAGGAAGTTCATCCACGATTATGGAGAGGTTTCAATTACAAGCACAAACCAATCGATTCAGTACAACTTGAACGAGGGCGACATGACAAGGAAAGAACATTGGAAGAGTACAATAAGTTGGTAGAAAAGATTGTGAAGCGTGACAATAAACGACGAAAAAGGTTGGAGGCTGCTGGCATTGATTACGAGTGCCCTGCGATTGTTGGTAACATCCATCCCGCACCGAAGAAAATAAAGTTTGAAGACTAA 948 0.3597 MIADDSGDDVGASEPAGAGGGSSFDTQQYPPHFSSLDLDGMRQDGVPGQPAGFGARDAEGSAGLTEFQLLTRRSRVPPFLCFVPSPPSLTRPKDSVREMGAKAKKAMKKSLKKATSTKPSSSSINKSEASDYLPLEGGPARKLPEQKPLESAATVLYIGRIPHGFYEEEMQGFFGQFGTVKRLRIARNKKTGKSRHFGFIEFQSPEVVAKVVAETMHNYLLFEHLLQVHLIPPEEVHPRLWRGFNYKHKPIDSVQLERGRHDKERTLEEYNKLVEKIVKRDNKRRKRLEAAGIDYECPAIVGNIHPAPKKIKFED 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02600 315 Coils Coil 260 280 - -
Adu06g02600 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 214 IPR000504 GO:0003723
Adu06g02600 315 SMART rrm1_1 155 229 IPR000504 GO:0003723
Adu06g02600 315 MobiDBLite consensus disorder prediction 1 59 - -
Adu06g02600 315 SUPERFAMILY RNA-binding domain, RBD 154 296 IPR035979 GO:0003676
Adu06g02600 315 CDD RRM_NIFK_like 155 229 - -
Adu06g02600 315 PANTHER - 99 314 - -
Adu06g02600 315 Gene3D - 90 237 IPR012677 -
Adu06g02600 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 233 IPR000504 GO:0003723
Adu06g02600 315 MobiDBLite consensus disorder prediction 113 129 - -
Adu06g02600 315 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 99 314 - -
Adu06g02600 315 MobiDBLite consensus disorder prediction 106 146 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02600 154 228 Eukaryotic Initiation Factors Gene Family AT1G71770 33.333 8.35e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02600 K14838 - gmx:100814276 322.398