Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02571 ATGATTTATATCACAATCACTTGCTGGGCAATATCCGCTTTCTGCACAAAGCTGGTTAATGACTTGGCATCGTGTTCTGAACGCTCGAGAGAGTATATCTGCAACTTGGATTCAAGATACGCTGCCGTTGCTAGTGATGATAGTCCATCAACTGTTCATGATGTTTTTCTCAGCAGACTGATGCAAACTGGTGCAACTGAAAGCTCTTCCACTTACAACTGTGTAAACCAGGTGGAAGAGCAGAGACAATTGAATTCCGAAAAAGAACAAAGCATTTTGAAAAACGTTGTTACAACTATTCATAAATTTTGGCGTTTGAAGGATGGATTGCATACTGCAGTACTGAAGAAGCTTCCAGGAGATGTTTCATACAGGCAGAAGCTTTCCGCTGATTTAGAAGGGGAAGTTAAAAATTTGAGGTCAGCATTCAGTGAATTGCATTTAAAGCACAAGTCTTTAGCAAGCGAGTTCCAAGCTCGTAGAGATCTTGATGCCAAAAATAAAGCAGAACTTTGTAAATTGAAAGGGGAGCTTGAACGCATTCTTGCAGAACTGGAAGAAAGCAATAGCAAACTTTTTACTCTTAAAGCAGAGAGAGATTCAGCAAAGGGGGCAGTTCTCCCTGTCTTAAATGTTGGAACTGCGCATGTTGCTAGTGATAAAGTCAGAGACAAGCAAAAGGATTTGCAAGATATGGAATCTACTCTGAAGGACCTATTGGACCAAGGTTCGTCTCGATTAGTGGAACTGAAAGGTCTTCACGAGGAAAGAATAAGAATATTACAGCAGTTGTGCGATCTACAGAACACGTTGAAGAATTTGGATTGTATTACTTCTTCCCATTGCTTCCAATTGGTTAGAGATCAGATAGAAAAGTCAAAAGCCGAAGTTCACGAGTATCAGGCTTTATTCGAGAAACTACAGGTTGAGAAAGACAATCTTGTGTGGAAGGAGAGGGAATGGTACATTAAAAATGACTTAGCAGATATTTTTCAAAGATCAGTGTCAGTTGCTGATTCTAGAGTGGCTGATTTACGGTCTGAGATACAGAAAAAGATAGATGAAAGAAATGTGATTGAAAATAAACTGCATGAGGAAGCAAGAGAACCGGGAAGGAATCAAGTTATAGGAGAATTTAAATCTTTGCTTTCTTCATTTCCTGAGGAAATGGAATCTATGCAAAGTCAACTAAGCAAGTATAAAGAATCAGCTTCAGATATCCATTCTCTGCGTGCAGATGTGCAGTCTATTTCTAATATTCTTGACAGGAAGGTAAAGGAATGTGATGTTTTCACTGTTAGGGCTGCTGGTCAAGCTGCTGAAATAAAGAGGCTGCTTGGTGTGGTTGAAGAATTGAGAGAGAGTGAGCGGGATTTGAAGTTGATACTGGAAATGTTTAGACGTGAATCCATTGATTCAAGGGATATCATGGAAGCCCGTGAGGCAGAATACAGAGCATGGGCAAATATTCAAAGTTTGAAAACTTCTCTTGATGAGCATGGCTTAGAACTGCGTGTTAAGACAGCAAATGAAGCTGAGGCCAAATCTCAACAAAGGCTGGCTGCTGCTGAAGCTGAGATAGCTGCCATGAGACAGAAATTAGAAGATTCTAAAAAGGAGATGTCTGAACTGTCTGTTGTATTAAGATCAAAAAATGGAGAAAATGAGGCCTACTTGTCTGAAATAGAGTCTATTGGGCAAGCATATGATGAAAAGCAGACTCAAAACCAGCATATGCTGCAGCAGATTACTGAGAGGGATGATTACAATATTAAGCTTGTTTTAGAAGGTGTAAGGGCAAGACAAAAGCAAGATTCTTTGGTCATGGAAAAGCGGGTAATGCAACACGAGATCCAGCAAGCAAATGTAACCCGAAATTTATATGATTCAAAAGCTGCGAGAATTGAGGACCAGTTGAAATTTTGTTCAGATCAAATTCAAAGACTAATAGAGGATAAGATGCAAAGTTCTGTCACTTTGGAAAACACTCGTAGAAGGCTGTTGGATGTTAGAAGATCATCTCAACAGGTTAAGGATACAGTTACAGAGGTGCAATCTAAATCTGGTAGTAGTCGAGTTACTTGTATGGAGTTACATGTTGAACTTGAGAAAGAAAGATTTTCCAAGAAAAGAATAGAGGAGGAGCTGGAGGTTTCTAGGAGAAAGCTTTCGCACCTTAAAGCACAGAATGAAGGATGCTCGGTGATTGAAAGACTCCAAGAGGAACTGGCAGAGTACCGGGAAATTGTTAAATGCAGTATCTGCCAAGACCGAACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTTTGCGGTACATGTATCCAGAAAGTATCTGGGAGTCGACACCGCAAATGTCCACAGTGTAGCACAAGCTTTGGGGCTAATGATGTTAAGCCTGTTTACTTGTGA 2415 0.4008 MIYITITCWAISAFCTKLVNDLASCSERSREYICNLDSRYAAVASDDSPSTVHDVFLSRLMQTGATESSSTYNCVNQVEEQRQLNSEKEQSILKNVVTTIHKFWRLKDGLHTAVLKKLPGDVSYRQKLSADLEGEVKNLRSAFSELHLKHKSLASEFQARRDLDAKNKAELCKLKGELERILAELEESNSKLFTLKAERDSAKGAVLPVLNVGTAHVASDKVRDKQKDLQDMESTLKDLLDQGSSRLVELKGLHEERIRILQQLCDLQNTLKNLDCITSSHCFQLVRDQIEKSKAEVHEYQALFEKLQVEKDNLVWKEREWYIKNDLADIFQRSVSVADSRVADLRSEIQKKIDERNVIENKLHEEAREPGRNQVIGEFKSLLSSFPEEMESMQSQLSKYKESASDIHSLRADVQSISNILDRKVKECDVFTVRAAGQAAEIKRLLGVVEELRESERDLKLILEMFRRESIDSRDIMEAREAEYRAWANIQSLKTSLDEHGLELRVKTANEAEAKSQQRLAAAEAEIAAMRQKLEDSKKEMSELSVVLRSKNGENEAYLSEIESIGQAYDEKQTQNQHMLQQITERDDYNIKLVLEGVRARQKQDSLVMEKRVMQHEIQQANVTRNLYDSKAARIEDQLKFCSDQIQRLIEDKMQSSVTLENTRRRLLDVRRSSQQVKDTVTEVQSKSGSSRVTCMELHVELEKERFSKKRIEEELEVSRRKLSHLKAQNEGCSVIERLQEELAEYREIVKCSICQDRTKEVVITKCYHLFCGTCIQKVSGSRHRKCPQCSTSFGANDVKPVYL 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02571 804 Coils Coil 342 369 - -
Adu06g02571 804 Coils Coil 632 652 - -
Adu06g02571 804 SMART ring_2 752 790 IPR001841 -
Adu06g02571 804 Coils Coil 222 242 - -
Adu06g02571 804 Coils Coil 506 547 - -
Adu06g02571 804 Coils Coil 709 729 - -
Adu06g02571 804 CDD RING-HC_BRE1_like 750 791 - -
Adu06g02571 804 Coils Coil 736 756 - -
Adu06g02571 804 Coils Coil 290 310 - -
Adu06g02571 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 733 804 IPR013083 -
Adu06g02571 804 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 14 804 - -
Adu06g02571 804 Coils Coil 449 469 - -
Adu06g02571 804 Coils Coil 168 198 - -
Adu06g02571 804 SUPERFAMILY Bacterial hemolysins 112 307 - -
Adu06g02571 804 ProSitePatterns Zinc finger RING-type signature. 767 776 IPR017907 -
Adu06g02571 804 ProSiteProfiles Zinc finger RING-type profile. 752 791 IPR001841 -
Adu06g02571 804 PANTHER RING FINGER PROTEIN-RELATED 14 804 IPR013956 GO:0004842|GO:0010390
Adu06g02571 804 Pfam Zinc finger, C3HC4 type (RING finger) 750 792 - -
Adu06g02571 804 SUPERFAMILY RING/U-box 746 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02571 Adu-Chr6 100960744 100979515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02571 752 803 C3H Transcription Factor Family AT2G42030 37.736 7.83e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02571 K10696 - gmx:100790744 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02571 06 100960744 100979515 Adu06g02571 06 100960744 100979515 ECH