Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02556 ATGAAGAAAGCGGAAGGGGAAAGTAGTTTAGATTTAGACAGTGATGTTATTGCATCTGAGATCAAAGCAGGATCAGTAAGTGATCCACTGGCCGAGGCGGTTCGAGGAACCATTCAAAATGATTCAGAGAAGAGAAAGGGCAAAGATGAAGCGAAAAACACAATCCCCTTCTACAAGCTCTTCTCTTTTGCAGACGCTTTGGATTATGCATTGATGATTGTGGGGACAATCGGTGCTGTTGGAAATGGAATGGCAAACCCTTTGATGACCGTTGTTTTTGGGAGCTTAATTGATGCATTTGGAGGCACCTCAAACTCCCAAAAAGTTGTTCATGATGTTTCCAAGCTGGCTCTCAAGTTTGTATACCTGGCTCTGGGTTCCTTTGCAGGATCCTTTCTTCAGGTTTCTTGCTGGATTGTCTCTGGGGAGCGACAATGTGCAAGAATAAGAAGCTTATACCTGAAAACAATTCTGAGGCAGGATGCCGGCTTCTTCGACACGGAAACCAACACCGGCGAGGTTGTTGGAAGGATGTCAAGTGACACTATGCTAATTCGAGAAGCCATGGGTGAGAAGGTAGGACAGTTTGTACAGTTAGTGGCATCGTTCGTTGGAAGTTTTGTCATAGCGTTCATCAAGGGATGGCTTCTTACCCTTGTTTTGCTGTCCTGTATTCCACCTCTTGTTCTTGCTAGCGCCGTCATGAGCATCGTTATTGCCAAAGTGACATCGCGAAGACAAGTAGCATATTCTGCAGCTGCATCTGTAGTAGAAGAGACTATTGCTTCTATCAGAACTGTTGCGTCATTCACGGGCGAGAAGCAAGCCGTGGCTAAGTATAATCAATCATTGTTGAAAGCTTATAAGACTGGAGTTCAAGAAGGAGTGGCTTCTGGATTGGGATTTGGTTCCATTCTTCTCATTGTTTTCTGCACTTATGCTTTGGCCATATGGTATGGTGGCAAATTGATTTTAGACAAAGATTATACAGCAGGGAAAATTATCACCATAATTTTCGCAATTTTGACAGGATCTCATTCTCTTGGACAGACCTCTCCTAGCATGAGTTCGTTTGCAGCAGGACAAGCCGCGGCTTATAAGATGTTTGAAACGATTAATAGGCGACCTGATATCGATGCTTACGACACAACTGGCCGGCAGCTGGATGATATTCGAGGCGACATAGAACTGAGAGAAGTTGGCTTCAGTTATCCGTCAAGGCCGGATGAGACTATATTCAATGGATTCTCTTTGTTCATACCAAGTGGCACAACTGTAGCTTTGGTAGGGCAAAGTGGGAGTGGAAAATCAACCGTTATTAACTTGATAGAGAGGTTTTATGATCCGCAAGCTGGTGAAGTTCTCATCGACAACATCAATCTCAAAGAGTTTAATCTGAAATGGATAAGACAAAAGATTGGCCTAGTTAGCCAAGAACCTGTTCTGTTTACTTGCAGCATCAAAGAAAATATCGCTTATGGTAGGGATGGTGCGACTGATGAAGAAATCAAAGTAGCAGCAGATCTTGCAAATGCTTCTAAGTTCATAGACACGCTTCCACAGGGACTGGACACGATGATTGGTGAACACGGAACTCAGCTCTCTGGAGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCCATTTTGAAAGATCCAAGAATTCTACTTCTTGATGAAGCTACAAGTGCACTTGATGCTGAATCCGAGAAAACAGTGCAGGAGGCTCTAGACAAAATCATGATAAATCGAACCACTGTTATTGTAGCTCACCGCTTAAGCACTGTTAGAAATGCTGCCACTATAGCTGTAATTCATCAAGGAAAAATAGTAGAAAAAGCACATTCTGAGCTCACTAAAGATCTTGAAGGAGCCTACAGCCAACTCAATAGATTGCAAGAGACTAACAGTGAGGCAGAACAGAATTTTTCTGTTGAAACAGAAAACCTTGAATCTACTACAAATTCTTCAAGGCATTCAAGTCAACGGTTTTCTTTTAGAAATTCCACAACTCATGTACCCGGCGTTGGAAACAGGAAAGACGATGAAGTTGCTCTTTCAGAAGACACAAACTCAAAACAACCTCCAAAAATACCGATCCGTCGCTTAGCTAAACTAAACAAGCCTGAGATCCCAGTCTTAATACTAGGGACTATAGCTGCAGTGGCCAATGGCATCATATTACCCTTTTTTGGGTTCATGGTTTCAAAGATGGTCCATATTTTCTATGAGCCTGCGGATGAACTCCGCAAAGATTCAAGATCTTGGGCGTATGTTTTCGTGGCGCTTGGCGTATCAGCGTTCTTTATCAATCCCTTGAGGTCCTACTTCTTTTCTGTTGCTGGTGAAAAGCTGGTAAAAAGAATGAGACTAATCTGTTTTGAGAAAATGATTAATATGGAAGTTAGTTGGTTTGATGAAGCTGAGCATTCAAGTGCTGCACTTGGATCAAGGCTGTCCACTGATGCAGCGTCTATTCGAGCTTTGGTTGGCGACGCGCTCGGATTAATGGTTCAGAACATAGCTGCTGCAGTTGCAGGCCTGGTGATTGCATTCCAAGCAAACTGGCAGCTCTCTGTTATAATTCTTGTATTGCTGCCTATATTAGCACTTAACGGAATTCTTCAGATGAAGTTCTTACAAGGATTCACTGCAGATGGAAAGAAATTATACGAGGAAGCAAGTCAAGTAGCAAGTGATGCTGTAAGCAGCAGTAGGACTGTGGCATCTTTCTGCGCTGAAGAGAAGGTGATGGAGTTGTACAAGAAGAAATGTGAGGCACCGATTAAGGCAGGCATAAAGCAAGGGATAATAAGTGGAGTTGGTTTTGGGTTATCATTCTTGTTTCTGTTTTCAGTGTATGCATGTAGTTTCTATGCTGGAGCTAAACTTGTAGGGGATGGTAAAGCATCTTTCTCTGATGTTTTCCGCGTCTTCTTTGCCCTGAATATGGCTGCTGTGGGGATGTCTCAAACTAGCACCTTGGCCCCTGACTCAGCTAAAGCTAAAAGTGCTGCTGCTTCTGTGTTGGCCATTATTGACAGAAAATCAAAAGTAGATCCCAATGATGACAATGGTCTGATTCTAGAAAACTTGATGGGAGAAGTAGAGTTTCACCATGTCACTTTCAAGTACCCCACAAGACCTGATGTTCAAATATTTAGAGATCTTTGCTTGACTATTTATTCTGGCAAGACAGTTGCGTTGGTTGGTGAAAGTGGAAGTGGAAAATCAACTATGGTATCACTGTTACAAAGATTTTACGACCCAGATTCAGGTCATATCACACTTGATGGAATAGATATCCAGAAAATTCAAGTTACATGGTTAAGACAACAGATGGGCTTGGTAAGCCAAGAGCCTATTTTGTTTAATGATACAATCAGAGGCAACATTGCATATGGAAAAGGAACACATGCAACAGAGGCAGAGATTACAGCTGCAGCAGAAATGGCAAATGCCCACAAGTTCATCAGTAGTTTGCAACAGGGTTATGAAACGATTGTGGGGGAAAGAGGATCAAAACTATCTGGTGGACAGAAGCAGCGCGTGGCAATTGCAAGAGCAATAGTGAAGAATCCAAAAATATTACTACTAGATGAAGCCACCAGTGCCCTGGATGCAGAGTCTGAAAAGGTTGTTCAAGATGCACTAGATAGAGTAATGGTGGAACGAACCACAATCATAGTGGCTCATAGGCTATCCACTATTAAGAACGCAGATTTAATTGCAGTGGTTAAGAATGGGGTCATTGTAGAGAAAGGAAACCATGAAACATTGATCAACCATGGTGGCCATTATGCTTCTTTGGTAGCATTGCACACAAGTACATCATAA 3834 0.4257 MKKAEGESSLDLDSDVIASEIKAGSVSDPLAEAVRGTIQNDSEKRKGKDEAKNTIPFYKLFSFADALDYALMIVGTIGAVGNGMANPLMTVVFGSLIDAFGGTSNSQKVVHDVSKLALKFVYLALGSFAGSFLQVSCWIVSGERQCARIRSLYLKTILRQDAGFFDTETNTGEVVGRMSSDTMLIREAMGEKVGQFVQLVASFVGSFVIAFIKGWLLTLVLLSCIPPLVLASAVMSIVIAKVTSRRQVAYSAAASVVEETIASIRTVASFTGEKQAVAKYNQSLLKAYKTGVQEGVASGLGFGSILLIVFCTYALAIWYGGKLILDKDYTAGKIITIIFAILTGSHSLGQTSPSMSSFAAGQAAAYKMFETINRRPDIDAYDTTGRQLDDIRGDIELREVGFSYPSRPDETIFNGFSLFIPSGTTVALVGQSGSGKSTVINLIERFYDPQAGEVLIDNINLKEFNLKWIRQKIGLVSQEPVLFTCSIKENIAYGRDGATDEEIKVAADLANASKFIDTLPQGLDTMIGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESEKTVQEALDKIMINRTTVIVAHRLSTVRNAATIAVIHQGKIVEKAHSELTKDLEGAYSQLNRLQETNSEAEQNFSVETENLESTTNSSRHSSQRFSFRNSTTHVPGVGNRKDDEVALSEDTNSKQPPKIPIRRLAKLNKPEIPVLILGTIAAVANGIILPFFGFMVSKMVHIFYEPADELRKDSRSWAYVFVALGVSAFFINPLRSYFFSVAGEKLVKRMRLICFEKMINMEVSWFDEAEHSSAALGSRLSTDAASIRALVGDALGLMVQNIAAAVAGLVIAFQANWQLSVIILVLLPILALNGILQMKFLQGFTADGKKLYEEASQVASDAVSSSRTVASFCAEEKVMELYKKKCEAPIKAGIKQGIISGVGFGLSFLFLFSVYACSFYAGAKLVGDGKASFSDVFRVFFALNMAAVGMSQTSTLAPDSAKAKSAAASVLAIIDRKSKVDPNDDNGLILENLMGEVEFHHVTFKYPTRPDVQIFRDLCLTIYSGKTVALVGESGSGKSTMVSLLQRFYDPDSGHITLDGIDIQKIQVTWLRQQMGLVSQEPILFNDTIRGNIAYGKGTHATEAEITAAAEMANAHKFISSLQQGYETIVGERGSKLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALDRVMVERTTIIVAHRLSTIKNADLIAVVKNGVIVEKGNHETLINHGGHYASLVALHTSTS 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02556 1277 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 360 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Adu06g02556 1277 ProSitePatterns ABC transporters family signature. 534 548 IPR017871 GO:0005524
Adu06g02556 1277 Gene3D - 1026 1276 IPR027417 -
Adu06g02556 1277 PANTHER - 31 1274 - -
Adu06g02556 1277 ProSitePatterns ABC transporters family signature. 1175 1189 IPR017871 GO:0005524
Adu06g02556 1277 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 31 1274 - -
Adu06g02556 1277 Gene3D - 385 633 IPR027417 -
Adu06g02556 1277 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 368 - -
Adu06g02556 1277 MobiDBLite consensus disorder prediction 645 695 - -
Adu06g02556 1277 CDD ABC_6TM_Pgp_ABCB1_D2_like 703 1018 - -
Adu06g02556 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1023 1272 IPR027417 -
Adu06g02556 1277 SMART AAA_5 1062 1255 IPR003593 -
Adu06g02556 1277 SMART AAA_5 422 614 IPR003593 -
Adu06g02556 1277 SUPERFAMILY ABC transporter transmembrane region 59 379 IPR036640 GO:0005524|GO:0016021
Adu06g02556 1277 CDD ABC_MTABC3_MDL1_MDL2 395 632 - -
Adu06g02556 1277 CDD ABC_MTABC3_MDL1_MDL2 1035 1270 - -
Adu06g02556 1277 Coils Coil 614 648 - -
Adu06g02556 1277 MobiDBLite consensus disorder prediction 645 674 - -
Adu06g02556 1277 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 395 631 IPR003439 GO:0005524
Adu06g02556 1277 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 714 1000 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Adu06g02556 1277 SUPERFAMILY ABC transporter transmembrane region 695 1020 IPR036640 GO:0005524|GO:0016021
Adu06g02556 1277 Pfam ABC transporter transmembrane region 713 985 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Adu06g02556 1277 Pfam ABC transporter transmembrane region 72 345 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Adu06g02556 1277 Gene3D ABC transporter type 1, transmembrane domain 59 1005 IPR036640 GO:0005524|GO:0016021
Adu06g02556 1277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 632 IPR027417 -
Adu06g02556 1277 Pfam ABC transporter 414 562 IPR003439 GO:0005524
Adu06g02556 1277 Pfam ABC transporter 1055 1203 IPR003439 GO:0005524
Adu06g02556 1277 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1035 1272 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02556 Adu-Chr6 100631607 100637455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02556 55 1276 Calmodulin-binding Proteins AT2G36910 43.805 0.0 1045
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02556 K05658 - gmx:100800293 1731.84