Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02548 ATGGGTTCTGTGAGTAACACAAATCCATGGGTGGCTCCAAATTCAGTTTTGAAGGACTGTTCCCAAGGGATTTGCAGCATGTATTGTCCTCAATGGTGCTACATCATGTACTCGCCTCCACCACCGTCAATCGTTCTCGGGGACGGTTCAGATGACGATGATTCTTCCTCCGGCTTCCAATTCTCTCCCCTTATAGTCGCAGTGATTGGAATCTTGGCAAGTACTTTCATCTTGGTCACTTACTACACCGTCATCTCAAGGTTCTGCAGGAACAGAGGAAGAGTTAACGATCAAGCAAATCATAGCAATGATGATACTGTTAATAACAATGAACCTTCTCAGGTTGCTGCGACTTCCGGCATGGACGAGGCTCAGATCAAATCGATAACCGTCTGTAAGTACATCAAGAACGGTGGGTTGGTTGAGGGAAGTGACTGTTCCGTTTGTTTATCAGAGTTTCAAGAGAATGAGAGTTTGAGATTGTTGCCCAAATGTAACCACGCTTTTCATCTTCCTTGTATTGATACTTGGCTTAAATCACAAGCTAGTTGTCCCTTGTGCCGCTCCAATATTGTTTTCTGTAATAATAACTCCAATCCCAGTCACTCTGACTCGGCATTGACACAGATTCCACATCCACCACCGGCAACTTCAAGTCCAGGAGAACAAAGTAAATCTGTAATGTGTGAATCCAATGGGGAAAAAAAAAAGGAGCAGTGTGGATGCATCTTTGTTCATCTCAAGCCGGTAAAGAACCTAAGGTGCGCCGTCATCGTCACCCCGCCCAAAATGGAGACGTCGTTCTGTCGCTGTCTAACAATGCACCTTTGCCTCACTTCTACACGTCGCATCTCCACCTTTGCTGAACTCGCGAAACGCCGTCGCTCCGTTACCGTGCTGGAATCTTTGTGCCGTTGCAACCTAACCGCACTGGAATCTTTGTGCTGTCGTTACCTAACCGCGCCGAAGTCTTTGTCTTGTCGCATCTCTGGCCCTGCTTCCAACCTGCCGTcagatggttcttttatatga 1032 0.4612 MGSVSNTNPWVAPNSVLKDCSQGICSMYCPQWCYIMYSPPPPSIVLGDGSDDDDSSSGFQFSPLIVAVIGILASTFILVTYYTVISRFCRNRGRVNDQANHSNDDTVNNNEPSQVAATSGMDEAQIKSITVCKYIKNGGLVEGSDCSVCLSEFQENESLRLLPKCNHAFHLPCIDTWLKSQASCPLCRSNIVFCNNNSNPSHSDSALTQIPHPPPATSSPGEQSKSVMCESNGEKKKEQCGCIFVHLKPVKNLRCAVIVTPPKMETSFCRCLTMHLCLTSTRRISTFAELAKRRRSVTVLESLCRCNLTALESLCCRYLTAPKSLSCRISGPASNLPSDGSFI 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02548 343 MobiDBLite consensus disorder prediction 204 228 - -
Adu06g02548 343 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 200 IPR044675 -
Adu06g02548 343 SUPERFAMILY RING/U-box 140 197 - -
Adu06g02548 343 SMART ring_2 146 187 IPR001841 -
Adu06g02548 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 3 200 - -
Adu06g02548 343 Pfam Ring finger domain 145 188 IPR001841 -
Adu06g02548 343 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Adu06g02548 343 CDD RING-H2_PA-TM-RING 145 188 - -
Adu06g02548 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 193 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02548 Adu-Chr6 100584457 100586437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02548 1 192 C3H Transcription Factor Family AT3G03550 52.381 1.90e-64 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02548 - - adu:107495094 445.662