Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02525 ATGGTGATCGTTAATGGTGTTGCTAGCAGAACAAGGAGCAAGAAGAAAGAGAGGTCTTTGAATCCGTCACCGTGTGTTGGATCAGGATCCCGAACATTGTCTTCGTCGTCATCAAAGTCCAGCGAGAGAAAGAAGGGGAAAAGAAAGGCTGAAGTTGATGTTGAGGTTGTGGAATTTGACTATGAGGCTTTCCATGAAAGATGGATGATGGAACCTCGGCAACCTCTTGAGATGCCTCCACCAAGAGACGTGATTGAACTCAGCGATGATAGTGATGATAATGCAGCTGCTGAGGGGTTGCAGAAGCTTCATCGTGGGTATGTTAATGAAGAGAAGAAGGAAGAAGTTCAAGAAAGAAACGTGTTTCCTATTGATGGTGCTGGAACTTCTGCCAACGATCCTATAATCGTTGGTTTGAGTGATACTAGTAGTGATGAAGGCACTGATGACAGTAATGAGGGCCGTGGAAGAAGTTTGGACTGGGATTTTGGATTATCAAGTGAGTCAGAGGACACTGATAACAGTGATGATGAAGATTTCAGAGTGGAGGATGAGGGAGAAGGTTCAGCTTCAGCATCAGCTTCAGCATCAACTTCAGCTTCAAGCAGTGATGATAGTGGTTCAAGTTCTTTTGATGATGAGGATGAAGAGGAGGAAAAGGAGAAGAGGAGATGTAAGAGGAGGAAGAAGGAGAAGAAGAGAAAAGAGCCAACTTTTGAGTCTCATAGCAATAAAGTTTTGCGCTGCGACGAGGTGATTGTGGAAACTGAATGCTCTGGAATTTGCAAGAAGAATGGTGAGAATAAGAACAATTCATCGTCAACCGAGAATAATGTATTTGATCATCAGCCAGAGAAAATGCTACCAAAGGATGCAGATTGTGCTAGTGTTCTCTTTGGAGAACGCAATACGGAGGGTTGTTCTTCAGAAAAAAATGAAGATAAGGAAATTAATGTAGCTAAGAAACCAGTGGAGGTTTGTTCTTCAAAAAAGAATGAAGATAAGGAAGAGAATGTAGTTAAGAAACCAGTGGAGGGTTGTTCTTTAAAAAAGAATGAAGATAAGGAAAAGAATGTAGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAAAAGAATGAAGATAAGGAAAAGAATGTGGCTAAGAAACCAGTGGAGGGTTGTTCTTCAAAGAAGAGCGAAGACAAAGGAAAGAAGGTGGCAAAGAAACCAATGCCTGCGGGGAATAGAGCACGGAAGAGAGTGGAAAGAACAGGAGAAAATGTTGGTGCTGATATTGAAGCCTCTTCCCAAAAGCGTTCGCGTCCATCCCCACCTGAGGAGGATGATTCAGAAAAGGATGAAAAGAAACCGGTAAAACAGAAGGGTCGTGAAAGTGTGTCTGATTTTTTGGCAAAGGACAAAGGGGACTCGCCGATGATCGATGAAAGAGTGCCGATGAATGATGAAAGAATGGAGAGTGCAGAGGAAGAGAGGGAGAACAAGAAGGAAGGAGAGGCTGAAGGGAAGCATAAGGCCGGGGCAGATTGCGAAAGTAGTTACAAAGAGAGGGAGCAACATAGAGTGACAACAAATCCATCTTGGCCAAAGGAGGCACCGTTGATTGAACTTCTTGCTGAATGCTTTTGGATTAAGCATAATCCAGATAATGTTCATAAGCAAGATACAATCTCAAAGGAACCAGCTCTCGATGTTCAGAGAAAATTTTTTTTTCAAAAGAAAGTGCCAATTGAAAAAACTGAATCTGAGAAGGAGAGGGATATGTTGTGGGAAGAAATGGATGCTTTGCTCAGACTAGGTGAAGTTGACTCCTTGGTTGGCTGTGTTGAGAATGTCGAAACACAACAGAACATAGAGGCTCCGGCAACCAATTGTAAGCACAAGTTTGTCCATGATGAAGAGACTGGAATATATTGCATACTCTGCCATTGGATGGTCATAGACATAAAAGGCATGCCGGTACCCTTTGTGAGTGAGTATCCAAGAGAAGGATCAAGAAAGAAGCTGCTATCTGATGGGCCTAATGGCTTATGCTTTGATGAGGCTCCATTTGGTGTCCGAGAAGGTGGTTACTCTAACAAGGAAGGCACAGTTTGGGACCTGATTCCAGCAGATACTAAGCAAAACCTGTATGCTCATCAGCTTGAAGGTTTTGAATTCCTTTGGAAAAACTTGGCAGGAACCATGGAGCTTCCTAAATTGAAGAGTTGTGACTTGAACAGCACGGGTGGATGCATCATTTCTCATGCTCCAGGGACCGGAAAGACACGGCTGACCATCGTGTTCCTCCAGACATACTTGGAAGTGTTTCCAGATTGCCATCCCATGATTATTGCTCCTGCTAGCTTACTGCTAACTTGGGAAGATGAGTTCAGAAAGTGGGACAATGAGATTCCGTTCCATAATTTGAGCAATCAAGACACATCAGGAAAAGAGCACCGAGTTGCATGGAGCAAAGTTGGAGGGTCTGCTCCAAGCCAGGAAGATATCCGGATGGTGAAGCTGTATTCTTGGTTCAAAGAACGAAGTATTCTTGGAATCAGCTACAGCCTATTTCAGAGGCTTACCGGCTTGAAGCGTGATAAAAGCTTGAAGGAGAATGCTGCCAGAGGGGTCATGGGAAAAATCCTGCTTGAAGTTCCTGGATTGTTGGTATTGGATGAAGGACACACGCCACGAAATCAGAGTAGTCAGATTTGGAAGGTTCTTTCTGAGATTCAAACTCACAAGAGAATCATCCTTTCCGGGACTCCTTTCCAGAACAATTTTCTGGAGCTTTACAATACAATCTGCGTGGTCAGACCGTCCTTTCCGGATACCATACCTCCTGAGCTTAAAAAGTTCTGCCAAAGAAGATTGATGCAAGAGAAGAAAGAATCTAAAGGTTTCAGTTGGGAACCAGTTTCTTCAATCAGAACTGAGAATCTAAATGATGAGAATATCAAGCAGTTGAAGCAGCTGATGGATCCATTTGTGCATGTTCACAAAGGCAGTATTCTTCAGAAGAATCTTCCTGGCTTGAAAGATTGTGTGGTGACTTTGATGCCGGGTGATTTGCAGAAAAAACTTCTTGAGGGCATTGAAGGACATCCGAACACACTGCCTTTTGATAGCAAGTCGGCCTTGGTGTCCGTCCATCCATCCCTTTTCCTTTGCTGCACTCTTTCACCTAAGGAAAGAGCTCTTGTTGAGATGGAACATTTGAAAGACCTCAAACTGAATCCGAATGTTGGCGTCAAAACAAGATTTTTGGTGGAGTTTGTAAGGATCTGTGATGCAATGAATGAGAAAGTGCTTGTGTTCAGCCAGTTCCTTGATCCTTTGACTTTAATCATGGAGCAATTAAAGTCAATTTTCAATTGGACTGAGAAAAAAGAAGTTTTCTACATGAGTGGAAAGCTGGATAAGAACCAAAGGCAGTTACTCATTCATTCCTTCAATGATCCAAACAGCCAAGCAAAAATCTTGCTTGCATCCACTAAAGCTTGCTGTGAAGGAATCAGTCTGGTTGGTGCTTCCAGGGTGGTGCTGCTAGATGTGGTTTGGAACCCCTCGGTCGAAAGGCAAGCTATCAGCCGTGCTTATAGGCTGGGGCAAAAGAAGGTGGTCTACACTTATCATCTCATAACACATGGGACCACCGAGTACACAAAATACTGCCATCAGGCCAAGAAGGACCGGTTGTCTGAACTAGTCTTTTCAGCAAAGAACACTGAACAGGATGAGCCCAAGAGTTCCGCCGTGGAATTCGAGGATGAAATTCTCGATAACATGCTTAAGTTGAGAGTTTCCAGTACTGAAGAGTGCAGCCATTGTGAACAAGTTGTCACGGAGGAATAG 3837 0.435 MVIVNGVASRTRSKKKERSLNPSPCVGSGSRTLSSSSSKSSERKKGKRKAEVDVEVVEFDYEAFHERWMMEPRQPLEMPPPRDVIELSDDSDDNAAAEGLQKLHRGYVNEEKKEEVQERNVFPIDGAGTSANDPIIVGLSDTSSDEGTDDSNEGRGRSLDWDFGLSSESEDTDNSDDEDFRVEDEGEGSASASASASTSASSSDDSGSSSFDDEDEEEEKEKRRCKRRKKEKKRKEPTFESHSNKVLRCDEVIVETECSGICKKNGENKNNSSSTENNVFDHQPEKMLPKDADCASVLFGERNTEGCSSEKNEDKEINVAKKPVEVCSSKKNEDKEENVVKKPVEGCSLKKNEDKEKNVAKKPVEGCSSKKNEDKEKNVAKKPVEGCSSKKSEDKGKKVAKKPMPAGNRARKRVERTGENVGADIEASSQKRSRPSPPEEDDSEKDEKKPVKQKGRESVSDFLAKDKGDSPMIDERVPMNDERMESAEEERENKKEGEAEGKHKAGADCESSYKEREQHRVTTNPSWPKEAPLIELLAECFWIKHNPDNVHKQDTISKEPALDVQRKFFFQKKVPIEKTESEKERDMLWEEMDALLRLGEVDSLVGCVENVETQQNIEAPATNCKHKFVHDEETGIYCILCHWMVIDIKGMPVPFVSEYPREGSRKKLLSDGPNGLCFDEAPFGVREGGYSNKEGTVWDLIPADTKQNLYAHQLEGFEFLWKNLAGTMELPKLKSCDLNSTGGCIISHAPGTGKTRLTIVFLQTYLEVFPDCHPMIIAPASLLLTWEDEFRKWDNEIPFHNLSNQDTSGKEHRVAWSKVGGSAPSQEDIRMVKLYSWFKERSILGISYSLFQRLTGLKRDKSLKENAARGVMGKILLEVPGLLVLDEGHTPRNQSSQIWKVLSEIQTHKRIILSGTPFQNNFLELYNTICVVRPSFPDTIPPELKKFCQRRLMQEKKESKGFSWEPVSSIRTENLNDENIKQLKQLMDPFVHVHKGSILQKNLPGLKDCVVTLMPGDLQKKLLEGIEGHPNTLPFDSKSALVSVHPSLFLCCTLSPKERALVEMEHLKDLKLNPNVGVKTRFLVEFVRICDAMNEKVLVFSQFLDPLTLIMEQLKSIFNWTEKKEVFYMSGKLDKNQRQLLIHSFNDPNSQAKILLASTKACCEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKKVVYTYHLITHGTTEYTKYCHQAKKDRLSELVFSAKNTEQDEPKSSAVEFEDEILDNMLKLRVSSTEECSHCEQVVTEE 1278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02525 1278 MobiDBLite consensus disorder prediction 350 401 - -
Adu06g02525 1278 Coils Coil 215 236 - -
Adu06g02525 1278 MobiDBLite consensus disorder prediction 1 52 - -
Adu06g02525 1278 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 320 1259 - -
Adu06g02525 1278 SMART ultradead3 705 947 IPR014001 -
Adu06g02525 1278 MobiDBLite consensus disorder prediction 433 523 - -
Adu06g02525 1278 MobiDBLite consensus disorder prediction 262 293 - -
Adu06g02525 1278 Pfam Helicase conserved C-terminal domain 1086 1197 IPR001650 -
Adu06g02525 1278 MobiDBLite consensus disorder prediction 166 184 - -
Adu06g02525 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 881 1238 IPR027417 -
Adu06g02525 1278 MobiDBLite consensus disorder prediction 23 37 - -
Adu06g02525 1278 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 320 1259 IPR044567 GO:0080188
Adu06g02525 1278 CDD DEXHc_ATRX-like 709 940 - -
Adu06g02525 1278 MobiDBLite consensus disorder prediction 83 120 - -
Adu06g02525 1278 CDD SF2_C_SNF 1076 1208 - -
Adu06g02525 1278 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1082 1238 IPR001650 -
Adu06g02525 1278 Gene3D - 1006 1278 IPR027417 -
Adu06g02525 1278 MobiDBLite consensus disorder prediction 190 207 - -
Adu06g02525 1278 SMART helicmild6 1108 1197 IPR001650 -
Adu06g02525 1278 MobiDBLite consensus disorder prediction 350 526 - -
Adu06g02525 1278 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 692 990 IPR027417 -
Adu06g02525 1278 MobiDBLite consensus disorder prediction 72 246 - -
Adu06g02525 1278 Gene3D - 689 988 IPR038718 -
Adu06g02525 1278 Pfam SNF2-related domain 731 1019 IPR000330 GO:0005524|GO:0140658
Adu06g02525 1278 MobiDBLite consensus disorder prediction 263 281 - -
Adu06g02525 1278 MobiDBLite consensus disorder prediction 38 52 - -
Adu06g02525 1278 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 735 935 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02525 Adu-Chr6 100050685 100055406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02525 1095 1227 RAD5 or RAD16-like Gene Family AT5G43530 38.346 1.41e-15 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu06g02525 SNF2_N 3.5e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02525 K10875 - aip:107627890 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02525 06 100050685 100055406 Adu06g02525 06 100050685 100055406 ECH
Adu06g02525 06 100050685 100055406 Adu09g00669 09 9163041 9165976 PCT