Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02405 ATGGGAAGAAGTTGTTCTTCCATATCACTCTTCCTTGCCTTGAAGTTATTACTACTAGTAGTAGCATGGTCATCAAAAAGGGGACACTGCTTAACTACCCCACGACCAAGGGCCACTAATAAGAGCATAGGTGCAGTGCTTGATTTGGATTCACTAATGGGTAAGCAGCAGAAGATAGCCATGGAAATTGCCATCAGAGACTTCAACAGATTCAGTAGAACTAAACTCCACTTGGAGGTGCAAAATTCCCGCGGGAATTCGGCTCAAACAGTTGTTAGCGCCATGGATCTTGCACAGAAGAAGCAGTTGCTAGCCATTGTAGGAACAATAACACAGAGCGAAGCATCTTTGGCAACTGAAATTAATAAGGCCACAAAAAACACCCCTATATTATCTCTATCTTCGTTTGCACCCATCACAGAGTTACCCTCTTCTCCATTCCCACAACTAATCCAACTCGGAGATGATATCAACATTCAGATGCAATGCCTTGCAGCCATTGTAGGACACTTCAAGTGGAAAAAAGTGACAACAATATATGAAGTTAATAGCAGGTTTTCTTATGATCCAGGTGTACTAATTTCCCTCTCCAATTCTCTTCGCCATGTTGGATCTGAGATCGTTAACCAGTTAGCATTTCCTTCCTTGTCTTTGCAATCTAGAATCGAAAATGAGCTTAACCAACTCAAGAAGAAGAGTAACAGGGTCTTCTTGATTGTGCACTCTTCTTTAGAGTTGGCTAGCGTGCTTTGCAAGAAAGCAAAACAAATGGGTTTGATGGAGAAAGGATATGTATGGATCATCCCCAACGAGGTTGCTTCCCTTCTTGATTCGGTTAACTCTTCAGTTATCTCTACCATGCAAGGTGTTATTGGATTCAAAACACATTTTTTGGAAACTACCAAACCATATAGAAAGTTCGGGTTCAGATTTCGTAGAAGGTTTGCTCAAGAGTACCCTGAAGAAGAAGAGAACAACACTCCAAGTGTTTTCGCACTTCGAGCTTATGATGCAGCTATTGCTACTGCTAAGGTTACAAACAAGTCACAAGGAAAGTTCAACATGAAAGAATTCCTTGATGAAAATTTACATCAATCTTCAACCTTCACCATAATTAATGTGATAGGAAAAAGCTATAGAGAAATGGCAGTTTGGTCTCCAACACATGGTTTTTCCAAGAACTTTGTTGAACATGAGAAAATGGAGGTAAATAAATCTAACGGTTATGGTGGAGTTGTTTTGAGTAATATTTATTGGCCTGGAGATTTACACTCAGTTCCAAGGGGATGGACCAATAGTAATGAGGAAATGCCACTTAAAATAGGAGTACCTGCAAATGATGCCTTTGCTCAGTTTGTGAATGTCACCTATGGTGACAGCAAGCATGCAACTTCCATAACTGGTTTTTCAATCAATGTCTTCAAAGCAGCTATTAAGAATCTTCCATATCACTTGCACTATGATTTTGTTCCCTTCAATGGCTCCTATGATGAAATGGTTAATCAAGTTAACAATAAGACATTAGATGCTGCAGTTGGAGATATATCAATATTGGCATATAGATATCATTTAGTTGAGTTCTCACAACCATATATTGACTCTGGACTTAACATGGTGGTCGTTGAGAAGCCCAATAAATCAAAACAAACATGGATGTTTATGGATGCATTCACAAAAGAGATGTGGTTGATGATGGCAGCAATGCACGTTTTGGTTGGATTTGTCATTTGGTTGATTGAACGCGAAGAAAATGAAGAACTACAAGGGCTGGGGGCGATGCTTTGGTTTTTAGTCACTGTAATATTCCTTGCACATAGAGAACCAATAAGAAGACCATTGGCTCGAACCGTGTTGGCACCATGGTTATTTGTTATCCTAATTGTAACCAGTAGCTTCACAGCGAGTCTAACATCGATGATGACCGTATCGCAACTTGAACCATCAGTGGTTGATATTCAGACCCTTCAGAAGAGAAATGCTGCAGTTGGTTGTGATGAGAATTCATTTATTGTGAGGTGTTTCAAAGGGGCTCCTCTTTGGCTAGGGATATATCCGAGGCATTGCTAA 2067 0.4006 MGRSCSSISLFLALKLLLLVVAWSSKRGHCLTTPRPRATNKSIGAVLDLDSLMGKQQKIAMEIAIRDFNRFSRTKLHLEVQNSRGNSAQTVVSAMDLAQKKQLLAIVGTITQSEASLATEINKATKNTPILSLSSFAPITELPSSPFPQLIQLGDDINIQMQCLAAIVGHFKWKKVTTIYEVNSRFSYDPGVLISLSNSLRHVGSEIVNQLAFPSLSLQSRIENELNQLKKKSNRVFLIVHSSLELASVLCKKAKQMGLMEKGYVWIIPNEVASLLDSVNSSVISTMQGVIGFKTHFLETTKPYRKFGFRFRRRFAQEYPEEEENNTPSVFALRAYDAAIATAKVTNKSQGKFNMKEFLDENLHQSSTFTIINVIGKSYREMAVWSPTHGFSKNFVEHEKMEVNKSNGYGGVVLSNIYWPGDLHSVPRGWTNSNEEMPLKIGVPANDAFAQFVNVTYGDSKHATSITGFSINVFKAAIKNLPYHLHYDFVPFNGSYDEMVNQVNNKTLDAAVGDISILAYRYHLVEFSQPYIDSGLNMVVVEKPNKSKQTWMFMDAFTKEMWLMMAAMHVLVGFVIWLIEREENEELQGLGAMLWFLVTVIFLAHREPIRRPLARTVLAPWLFVILIVTSSFTASLTSMMTVSQLEPSVVDIQTLQKRNAAVGCDENSFIVRCFKGAPLWLGIYPRHC 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02405 688 Pfam Ligand-gated ion channel 559 666 IPR001320 GO:0015276|GO:0016020
Adu06g02405 688 Pfam Bacterial extracellular solute-binding proteins, family 3 463 550 IPR001638 -
Adu06g02405 688 PANTHER GLUTAMATE RECEPTOR 39 672 - -
Adu06g02405 688 Gene3D - 39 157 - -
Adu06g02405 688 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 672 - -
Adu06g02405 688 Gene3D - 332 441 - -
Adu06g02405 688 Gene3D - 158 327 - -
Adu06g02405 688 Pfam Receptor family ligand binding region 58 350 IPR001828 -
Adu06g02405 688 SUPERFAMILY Periplasmic binding protein-like II 415 563 - -
Adu06g02405 688 SUPERFAMILY Periplasmic binding protein-like I 43 430 IPR028082 -
Adu06g02405 688 SMART GluR_14 440 624 IPR001320 GO:0015276|GO:0016020
Adu06g02405 688 Gene3D - 550 673 - -
Adu06g02405 688 Gene3D - 458 533 - -
Adu06g02405 688 Gene3D - 534 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02405 Adu-Chr6 97773735 97779590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02405 37 675 Ion Channels AT2G29120 30.360 1.19e-99 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02405 - - aip:107605043 1247.26