Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02393 ATGATCATTACCTTCTTACACATGAAAGCATTGATCTGTTTCTTCTTCTTTGTGTTTGTCCCCACATCGGGGAATGACCTCTTAAGCTGTGAGACAACTTCACCAGATGCATCTGGCTACAGCTGCATACAAAATAATAAAAGCTCTATTCAATGTGCAACATTTGCACTCATTCACACAAATCCATACTTTTCTTCTCTCTCAAACCTCACTCATTACTTGGGACTTAACCGTTTTCTGATAGCAAAATCAAATGGTTTCTCTCCAGAAAACACTGAAATCCTCTCCAATGATCAACCCCTTTTGATACCAATTGATTGCAAGTGCAGCAAACATGGTTTTTTCTATGCTGAATTAACCAAAACCACCATCAAAGGTGAGAGCTTCCATGGCATTGCTGAATCACTTGAAGGCTTAACTACCTGCAAGGCCATAAAAGATCGAAACCCCGGCGTGTCGCCTTCGAATCTCAACGGAGAATTCAAGTTGCTGATTCCATTAAGATGTGCATGCCCAGTTTCATCTTCTCAAGAACAGAGGGCTCTGCTTTCTTATCCTGTAAGTAAAGGCGACACAGTTTCGAATTTGGCTTCAAAGTTTAATGTTACCATAGAATCCATAATTTCTACAAATAATTTATCATCATCAGAAGGGTTTGAAACTCAAAGCCTTACACCTTTTACATGCCTTCTGATTCCATTGTTAAATGATAATCCTGTGGCTAAACCCTCTAATAATCCGGTGATTAGTCCACAAAAGAAAACAAAAATGTGGAGAACTGAGTTGTGTATTGGCCTAGCCGGTGTTGCACTTGGACTCTTCATTGCTTCGTTAGTGGGATTCTTTTTCATCAGATTGAAGAACAAGAAGCAGAGTGTGAAGAACAATAATAAGTGTAAAGAGTTAGATATGGAGCTTCAACATCTGAATCTGAGTGTAAGAACAACCAGTGACAAAAAAGTCTCATTCGAGGTACCTCACGAGGGGAAGATCCTAGAAGCTGCGACGCCTCGAAAGATTTTCCTTGAGACATACACAAGGGAGGAAATTCGGAACGCAACAGAAGACTTCAGCTCAAGCAATCACATTGAGGGGCCGGTGTTCCATGGCCGATTGAACGGCAAGAACATAGCAATAAAAAGAACAACGAACGATGTGGTTTCGAAGATAGAGTTCGGCCTCTTCCACCACTCAGTTCAACGTCACCCCAACATTCTAATGCTTCTTGGAACAACAAGCTTGCTAGAGGGTCCAGATTCCTACCTGGTTTTCGAGTATGCGAAAAACGGATCCTTGAAAGACTGGCTTCACGGTGGCTTGGCAATCAAGAATCAGTTCATTGCTTCATGCTATTGTTTCTTGACGTGGAGGCAGAGGCTCCGGATCTGCCTCGACATAGCCGGCGCCTTGCAGTACATGCACCATGTGATGATCCCAAGCTATGTTCATAGGAACATAAAGAGTAGGAACATTTTCTTGGATGAAGAGTTTGGTGCAAAACTTGGGAATTTTGGTATGGCAATGTGTGCTGAGAATGAAACTGAAGATCCACATTTCTATTCCACAAACCCTGCTTCTTGGAGCCTTGGTTATTTGGCACCTGAATTTGTTCATCAAGGTGTAGTTTCCCCAAGCATTGATGTGTTTGCTTATGGGGTGGTTTTGTTGGAGGTTTTGTCCGGCCAGACACCCATAAGCAGGCCTAATGACAAGGGTGAAGGGAGTGTTTGGCTCACGGATAAAATCCGGTCGATTTTGGCGTCGGAGAAGAATGCAATTGAGCTGAGGGAGTGGATTGATAGTGCCTTAGGGGAGAACTATTCGTTCGATGCAGCTTTCGAATTGGCTAACATTGCAAGGGCTTGTGTTGAAGATGTGGCTTCTTTGAGACCAAGTGCAAATGAAATTGTTGACAAGATTTCAAGATTGGTGGAGGAGTTTCCGGATGATGAACACCACATGTTAATCACCGAAAGCTCTAGCAAGCCACTGGTTAATGCTGTATGA 2007 0.428 MIITFLHMKALICFFFFVFVPTSGNDLLSCETTSPDASGYSCIQNNKSSIQCATFALIHTNPYFSSLSNLTHYLGLNRFLIAKSNGFSPENTEILSNDQPLLIPIDCKCSKHGFFYAELTKTTIKGESFHGIAESLEGLTTCKAIKDRNPGVSPSNLNGEFKLLIPLRCACPVSSSQEQRALLSYPVSKGDTVSNLASKFNVTIESIISTNNLSSSEGFETQSLTPFTCLLIPLLNDNPVAKPSNNPVISPQKKTKMWRTELCIGLAGVALGLFIASLVGFFFIRLKNKKQSVKNNNKCKELDMELQHLNLSVRTTSDKKVSFEVPHEGKILEAATPRKIFLETYTREEIRNATEDFSSSNHIEGPVFHGRLNGKNIAIKRTTNDVVSKIEFGLFHHSVQRHPNILMLLGTTSLLEGPDSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWRQRLRICLDIAGALQYMHHVMIPSYVHRNIKSRNIFLDEEFGAKLGNFGMAMCAENETEDPHFYSTNPASWSLGYLAPEFVHQGVVSPSIDVFAYGVVLLEVLSGQTPISRPNDKGEGSVWLTDKIRSILASEKNAIELREWIDSALGENYSFDAAFELANIARACVEDVASLRPSANEIVDKISRLVEEFPDDEHHMLITESSSKPLVNAV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02393 668 ProSiteProfiles LysM domain profile. 183 232 IPR018392 -
Adu06g02393 668 SUPERFAMILY Protein kinase-like (PK-like) 341 650 IPR011009 -
Adu06g02393 668 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 667 - -
Adu06g02393 668 PANTHER PROTEIN LYK2 6 667 - -
Adu06g02393 668 SUPERFAMILY LysM domain 184 216 IPR036779 -
Adu06g02393 668 CDD LysM 184 216 IPR018392 -
Adu06g02393 668 SMART LysM_2 120 166 IPR018392 -
Adu06g02393 668 SMART LysM_2 184 233 IPR018392 -
Adu06g02393 668 Pfam LysM domain 185 217 IPR018392 -
Adu06g02393 668 ProSiteProfiles Protein kinase domain profile. 353 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu06g02393 668 ProSiteProfiles LysM domain profile. 119 165 IPR018392 -
Adu06g02393 668 Pfam Protein kinase domain 372 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu06g02393 668 Gene3D Phosphorylase Kinase; domain 1 332 426 - -
Adu06g02393 668 Gene3D LysM domain 172 240 IPR036779 -
Adu06g02393 668 Gene3D Transferase(Phosphotransferase) domain 1 427 660 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02393 Adu-Chr6 97553563 97555569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02393 39 665 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.673 2.29e-148 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Adu06g02393 Pkinase 5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02393 - - gmx:100816082 918.302