Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02252 ATGGACAGAGACATGCTTCCAGCAAGGTGGACGGAACCCTTACTTGGAGAAGACAGCACTGACATTGGAATTCCCATGAATGCCCCTCTCACTTCCTTCAAAACCATACCCCAGCCTCCTCCAATTACCATAAACCCCTTCCCCTTCCTCCAACAACAAACCCCTCTAATTGGCTCCGCTGACATGACTTCCGCTACTGAATTCCCGCCGGCGACGCGGTTGCTCCCGGCGGGGGGCACCGACGATGATGCGGTGGCGCTGGGTGCTGGATTTGAAATGGAAGCGAAATGGGGAGAGGGGGAAGTTGAAGAAGGTAGCATTGAGGCTTCAGTGTGGAATTACGATTCTGATGAGAATGTTGAGAGTGGTAGTAAGGCTGTGGTGGTGGAGGAGAGTGGGAATCATAGCGGCGGAGGGAATGGGAATTTGAGCTTGAGTGGCGGTGTCAATGGTGGAGATCAGAAAGGGAAGAAGAAAGGGATGCCGGCGAAGAATCTCATGGCGGAGAGGCGGCGCAGGAAGAAGCTTAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAAGATTAGCAAGATGGATAGGGCTTCGATACTTGGGGATGCAATCGACTACTTGAGGGAGTTACTGCAGCGGATTAATGATCTTCACAATGAACTGGAGTCAACTCCTCCTGGCTCTTCGCTGCAATCTTCCACCACCAGCCTTCAACCTTTGACACCCACGCCGCAAACCCTTCCGTGCCGGGTGAAGGAGGAACTGTATCCTGGTGTCTTGCCAAGCCCCAAAAACCAACCTGCAAAGGTGGAAGTTAGGGTGAGGGAGGGGAGAGCTGTCAACATTCATATGTTTTGTACTCGCCGACCAGGTCTTCTGCTTTCAACCATGCGGGCTCTGGATAACCTCGGCTTCAATGGCTTTGCTTTAGACGTCTTCAGAGCCGAGCAATGCAGAGAAGGGCAGGATGTTCTTCCTGAGGAAATCAAAGCAGTGCTGCTGGATTCAGCAGGGATCCATGACATGATGTGA 1029 0.5219 MDRDMLPARWTEPLLGEDSTDIGIPMNAPLTSFKTIPQPPPITINPFPFLQQQTPLIGSADMTSATEFPPATRLLPAGGTDDDAVALGAGFEMEAKWGEGEVEEGSIEASVWNYDSDENVESGSKAVVVEESGNHSGGGNGNLSLSGGVNGGDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLRELLQRINDLHNELESTPPGSSLQSSTTSLQPLTPTPQTLPCRVKEELYPGVLPSPKNQPAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGFNGFALDVFRAEQCREGQDVLPEEIKAVLLDSAGIHDMM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02252 342 MobiDBLite consensus disorder prediction 135 149 - -
Adu06g02252 342 Gene3D - 154 224 IPR036638 GO:0046983
Adu06g02252 342 SMART finulus 166 215 IPR011598 GO:0046983
Adu06g02252 342 CDD bHLH_AtAMS_like 163 226 - -
Adu06g02252 342 Pfam Helix-loop-helix DNA-binding domain 167 209 IPR011598 GO:0046983
Adu06g02252 342 MobiDBLite consensus disorder prediction 218 244 - -
Adu06g02252 342 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 93 342 - -
Adu06g02252 342 MobiDBLite consensus disorder prediction 130 164 - -
Adu06g02252 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Adu06g02252 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 229 IPR036638 GO:0046983
Adu06g02252 342 PANTHER BHLH TRANSCRIPTIONAL FACTOR 93 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02252 Adu-Chr6 93765306 93768864 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02252 99 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 69.163 1.42e-90 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu06g02252 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02252 - - adu:107494642 422.935