Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02251 ATGAGTTCCGGTACCGAATTCCCGCCGGCGACTCGGCTGCTCCCGGCGGGGGCTACCGACGATGATCCCATGGCGCTGGGTGCTGGATTTGGTGCCTCCGCTGCGTTTGAAATGGAAGCAGTTGGTGGCTCTGGAAACGCTCTGTTTTCGAGCAGGGGAAAGGGATTGGAAGCTTTGGAAGTGAGTAATTTGAAGAGGGTGCAGGAAGTTGAAGAAGCTAGCAATGAGGGTTCAATGTGGAATTCTGAAGAGGATGATGAGAGAACTGATGAGGTGGTGGTCGAGGAGAGTGGGAAGAAGAAGAAGAAGGGGATGCCGTCCAAAAATCTTATGGCGGAGAGGCGGCGAAGGAAGAAGCTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCAAATATTAGCAAGATGGACAGAGTTTCGATACTTGGAGATGCAATTGACTACATGAAGGAGTTACAGCAGCGGGTCAATGATCTTCAAAATGAACTGGAGTCAACTCCAACTAGCTGTTCGCCATCATCTTCCACCAGCATTCAACCTTTGACACCCACACTGCAAACCCTTCCATGCCGGGTGAAGGAAGAACTGTGTCCGATGCCAATCCCAGGAAACCAAACAGCAAAGGTGGAAGTTAAGGTAAGGGACGGCAAAGCTGTCAACATTCACATGTTTTGTAGCCGCCGACCAGGTCTTCTGGTCTCTACAATGCAGGCTCTGGATAACTTCGGATTAGATGTTCAGCAAGCTGTTATTAGCTGCTTCAATGGTTTTGCTTTAGACATCTTCAAAGCTGAGCAATGCAGAGAAGGGCAGGATGTGCTTCCTGAGGAAATCAAAGCAGTTCTGCTGGATTTAGCAGGATCCAAATAA 873 0.4903 MSSGTEFPPATRLLPAGATDDDPMALGAGFGASAAFEMEAVGGSGNALFSSRGKGLEALEVSNLKRVQEVEEASNEGSMWNSEEDDERTDEVVVEESGKKKKKGMPSKNLMAERRRRKKLNDRLYMLRSVVPNISKMDRVSILGDAIDYMKELQQRVNDLQNELESTPTSCSPSSSTSIQPLTPTLQTLPCRVKEELCPMPIPGNQTAKVEVKVRDGKAVNIHMFCSRRPGLLVSTMQALDNFGLDVQQAVISCFNGFALDIFKAEQCREGQDVLPEEIKAVLLDLAGSK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02251 290 PANTHER BHLH TRANSCRIPTIONAL FACTOR 71 288 - -
Adu06g02251 290 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 71 288 - -
Adu06g02251 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 153 IPR011598 GO:0046983
Adu06g02251 290 MobiDBLite consensus disorder prediction 1 28 - -
Adu06g02251 290 Pfam Helix-loop-helix DNA-binding domain 111 154 IPR011598 GO:0046983
Adu06g02251 290 ProSiteProfiles ACT domain profile. 221 290 IPR002912 -
Adu06g02251 290 MobiDBLite consensus disorder prediction 71 109 - -
Adu06g02251 290 CDD bHLH_AtAMS_like 107 165 - -
Adu06g02251 290 Coils Coil 143 170 - -
Adu06g02251 290 MobiDBLite consensus disorder prediction 92 109 - -
Adu06g02251 290 Gene3D - 94 168 IPR036638 GO:0046983
Adu06g02251 290 SMART finulus 110 159 IPR011598 GO:0046983
Adu06g02251 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 107 174 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02251 Adu-Chr6 93705829 93711324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02251 1 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 53.420 1.27e-92 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu06g02251 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02251 - - ahf:112697118 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02251 06 93705829 93711324 Adu06g02251 06 93705829 93711324 ECH