Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02230 ATGAAAATCGAAAAAAACGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAGAAGAAGAAGAAGAAGAagaaaaagacgaagaggaagaggaagaggaagaggaaccAGAAGAAGGTAAGTAAGGAAGCTAAGGTGGATCGAAGGCATGGGAAGAGGCCTCTTCTTCCTTCTGATTCTAGATCAGAAGAGAAAAGAAGAGAAGAAGATGATTGTTTTCTCCACAACGTTCCTCTTCAGCCACCTTCACAATCTGAAATCCAACAACAAGAAGAGGAAGAACCTTCACCAAATCTTCAAATAGTTCAGCTCCAAGACCAAGGCAAGAAGGATGTGAGAAAACGACATTATAGAGGAGTAAGGCAGAGACCATGGGGAAAATGGGCAGCCGAAATCAGAGACCCTAAAAAGGCGGCGAGAGTTTGGTTAGGAACCTTTGACACTGCAGAAGCCGCAGCAGCAGCTTACGATTCTGCGGCCTTAAAATTTAAAGGTAACAAAGCCAAACTCAATTTTCCTGAGCGCGTTGCCGCTTCCAATTCCGCTTCAACAACTTATCATCACTCTTCACAACCACCACCTACTATGGTGTATCGACCTTCTTCACAACCTTATACTCCATTAATGCCGCCGCCGACGTCCTCCTCCACATCGGAGGAAGGAGGATTTCCAAACCTAATGCAATATGCGCAGTTGCTTTGGAGTAGAGACGATGATGATCTACAACGTGCAGCTTCAGGGCTTTATCATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAACAATTTTTCTTCATATGGTTCTGTAATGAATTCATCATCAGGGTTGTCTTCTTCTTCTACTACTTCAGATTCTGCGGTTGTGATGACTGGTCAACTCCATAGCATGATGGGTGCACCACCACGACCACCCAAGGGAGATTATGATTATTATTTTGGTCAAGGGACTGATTTTGATGGCAGGAATTGA 1038 0.394 MKIEKNEEEEEEEEDEEEEEEEEEEEEEEKKKKKKKKTKRKRKRKRNQKKVSKEAKVDRRHGKRPLLPSDSRSEEKRREEDDCFLHNVPLQPPSQSEIQQQEEEEPSPNLQIVQLQDQGKKDVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDSAALKFKGNKAKLNFPERVAASNSASTTYHHSSQPPPTMVYRPSSQPYTPLMPPPTSSSTSEEGGFPNLMQYAQLLWSRDDDDLQRAASGLYHNNNNNNNNNNNNNNNNNNNNNNNNFSSYGSVMNSSSGLSSSSTTSDSAVVMTGQLHSMMGAPPRPPKGDYDYYFGQGTDFDGRN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02230 345 Coils Coil 1 48 - -
Adu06g02230 345 MobiDBLite consensus disorder prediction 89 116 - -
Adu06g02230 345 MobiDBLite consensus disorder prediction 192 207 - -
Adu06g02230 345 MobiDBLite consensus disorder prediction 1 129 - -
Adu06g02230 345 PANTHER DNA-BINDING DOMAIN 118 300 IPR044808 GO:0003700|GO:0009873
Adu06g02230 345 MobiDBLite consensus disorder prediction 33 50 - -
Adu06g02230 345 Pfam AP2 domain 127 176 IPR001471 GO:0003700|GO:0006355
Adu06g02230 345 SMART rav1_2 127 190 IPR001471 GO:0003700|GO:0006355
Adu06g02230 345 MobiDBLite consensus disorder prediction 51 85 - -
Adu06g02230 345 MobiDBLite consensus disorder prediction 208 222 - -
Adu06g02230 345 MobiDBLite consensus disorder prediction 7 26 - -
Adu06g02230 345 Gene3D AP2/ERF domain 126 186 IPR036955 GO:0003700|GO:0006355
Adu06g02230 345 ProSiteProfiles AP2/ERF domain profile. 127 184 IPR001471 GO:0003700|GO:0006355
Adu06g02230 345 MobiDBLite consensus disorder prediction 192 233 - -
Adu06g02230 345 MobiDBLite consensus disorder prediction 257 345 - -
Adu06g02230 345 MobiDBLite consensus disorder prediction 257 313 - -
Adu06g02230 345 CDD AP2 127 185 IPR001471 GO:0003700|GO:0006355
Adu06g02230 345 PRINTS Ethylene responsive element binding protein signature 150 166 IPR001471 GO:0003700|GO:0006355
Adu06g02230 345 PRINTS Ethylene responsive element binding protein signature 128 139 IPR001471 GO:0003700|GO:0006355
Adu06g02230 345 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 118 300 - -
Adu06g02230 345 SUPERFAMILY DNA-binding domain 127 185 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02230 Adu-Chr6 93204439 93207642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02230 108 204 AP2-EREBP Transcription Factor Family AT5G61890 74.747 3.19e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu06g02230 AP2 3.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02230 - - aip:107647314 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02230 06 93204439 93207642 Adu06g02230 06 93204439 93207642 ECH
Adu06g02230 06 93204439 93207642 Adu05g03516 05 107731767 107734263 PCT