Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02130 ATGGGTGAAAGGTGTGACTTTCTTGAAGAAATCTCCACAAAAAGAGCAGATTGGATCATTAAGGTTTATGTTGTAAGGATGTGGTATGGTCCTCCACGCCCAAATAGTAGTGAAGCTGGTGCTTTAGAGATTGCATTGCACGACTTGAAGGGCAACAGGATACACTGCACGATTCCAAAATCAGTGGTGCGACTGTTCCGGCCCATTCTGTCGGAGGGGCAGCTATATAGTATTTCTTCTTTTATAGTCCAAAAGAACAATATGTGGATGAAGTGCAGCTCGCTTCAGTATAGGATCACCTTATTACAAAGAAGCATGGTTGTTCATATCCCTCAACCGCTCTTTCCGTTTCAGCCATTTACATTTAGGAGTATTGCGTCTATCCTGCAAGAAGAAAGGCTTGATCAGAATTTTCTTTTTGATGTGCTAGCAGAGGTTATAGGGAAGGAGGACCCAAAGGATTTGGTTACCAAGCAAGGGCAGGAAAGCAAGCGGTTAGGGCTGTTAGTGGAGGACCTTGAGAAGAATTCTATCAGTTGTACCCTATTTGGTTCACTGGTAGATTTGATCCAACCCTATTTAGATGGTGATAAGACTGAACCTCTCATAGTTGCATTCCAACTATTTAGAGCAAAGGAATGGAATGGAAAGATTAGTATTCAGAGTAGTTTTGACACATCTAACATCCACATAAATCCCAATATTAAGGAGGCCGAACTATTTAAAAAGAGCACTGAAGGTGATAGTTGTTTTTCATCCCAGAGGATAAGTCATATGTCATCCAGTTCATATCGATCTGCTATCGATGAGCTCAGAAAAGGGATATGCAAAGTTGAAACAATAGACAGTGTGTTGAATGCAAGTGATGTTGGGTTTAAATGGATACTATGTACGATTGTTGACTTTGATGTCGGGAGGAATGATTGGTTCTTCATAGCTTGCAAGTATTGTCATAAAAAATGCAAAAAGATAGAGGAGAGATTTGAATGTGACCATTGCCGCAAGAAGGCCGTTCAGGTAGACTTGCGGTATAAGCTTCAAGCTTATGTTTCCGATGCAACTGGAAGTATGTGTGTAGTGTTGTGGGATACCGAAGCAAGCCAAATTGTAGGGTTGAGTGCAACCAAAGTCAGAGAAACCTACAGTCAGGATGATTCTGATGATTCTTACCCGGAGGTGCTGAAGACGGCCTTGGACATGAAGTTGCTATTAAGGATTAATGTTAAAAGTAGTAATTTGAGTGGTAATGAGAATGTCTACAATGTCACAAAAGCTTGCCTTGATGAGCACCTTATCCATAAATACAGCCAGTCTGTAAATGAACAATCTATGGAAGGGTTGGATAATGTTACTAGCTTGGATTGTACTACTGATGTTGTTTATCTTGGTGATGATGAATCTGTCCAAGGTGGACAGGAATCCGTCAATGAGTCTAAGACAGTTACCAGCAGCAAGGGAAGAGCTAAAAGGATTGATGCAGGAATTATAGGAGTAGTTGCGAAAGACTTGGAGAGTATACCCGTAGGGCAGTTGTCAAGTACTAAGAAGCCAAGGTTGAGTATTAAGAAAGAAAAGACTCTCTAG 1584 0.4104 MGERCDFLEEISTKRADWIIKVYVVRMWYGPPRPNSSEAGALEIALHDLKGNRIHCTIPKSVVRLFRPILSEGQLYSISSFIVQKNNMWMKCSSLQYRITLLQRSMVVHIPQPLFPFQPFTFRSIASILQEERLDQNFLFDVLAEVIGKEDPKDLVTKQGQESKRLGLLVEDLEKNSISCTLFGSLVDLIQPYLDGDKTEPLIVAFQLFRAKEWNGKISIQSSFDTSNIHINPNIKEAELFKKSTEGDSCFSSQRISHMSSSSYRSAIDELRKGICKVETIDSVLNASDVGFKWILCTIVDFDVGRNDWFFIACKYCHKKCKKIEERFECDHCRKKAVQVDLRYKLQAYVSDATGSMCVVLWDTEASQIVGLSATKVRETYSQDDSDDSYPEVLKTALDMKLLLRINVKSSNLSGNENVYNVTKACLDEHLIHKYSQSVNEQSMEGLDNVTSLDCTTDVVYLGDDESVQGGQESVNESKTVTSSKGRAKRIDAGIIGVVAKDLESIPVGQLSSTKKPRLSIKKEKTL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02130 527 Gene3D - 258 436 IPR012340 -
Adu06g02130 527 Gene3D - 115 252 IPR012340 -
Adu06g02130 527 PANTHER REPLICATION FACTOR A 1, RFA1 45 423 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Adu06g02130 527 Pfam Replication factor-A C terminal domain 306 418 IPR013955 -
Adu06g02130 527 CDD RPA1_DBD_A_like 20 99 - -
Adu06g02130 527 CDD RPA1_DBD_B_like 156 244 - -
Adu06g02130 527 SUPERFAMILY Nucleic acid-binding proteins 8 112 IPR012340 -
Adu06g02130 527 SUPERFAMILY Nucleic acid-binding proteins 120 248 IPR012340 -
Adu06g02130 527 SUPERFAMILY Nucleic acid-binding proteins 291 425 IPR012340 -
Adu06g02130 527 Gene3D - 6 109 IPR012340 -
Adu06g02130 527 Pfam Domain of unknown function DUF223 44 109 IPR003871 -
Adu06g02130 527 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 45 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02130 Adu-Chr6 88829246 88831640 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02130 1 408 Core DNA Replication Machinery Family AT5G08020 25.776 6.42e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02130 - - ahf:112716567 1017.68