Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02108 ATGGAAATTCATTTCCAGCAACCAAATCTTGAGCATAATAACAAAAGTGACAAGAAGAATCCAGGAATTGGGATCACCAAAGGAAACAAATTCAAAGGAAGAAGCAAAACCAACAACAACAACACTACAAACAAATTTGTTGGAGTGAGGCAGAGGCCTTCAGGGAGATGGGTGGCAGAGATCAAGGACACAACACAAAAGATAAGAATGTGGCTCGGAACCTTCGAGACGGCTGAAGAGGCGGCCAGAGCCTACGACGAAGCCGCCTGCCTCCTCCGCGGATCAAACACTCGAACTAACTTCATCACTCATGTCTCCACGGATTCTCCCCTGGCTTCACGCATCAGGAACCTTCTCAACGACAAAAAAGGCATCAAAAAACAAGAAAATAATGTTGTTTCTTGCGCCCCAAGAATCCTTGGTAGTACTAGCTCAAGTTCAACAAACAATGATAAAATTGAGAACTCTGTTCCACAAGTAGTGCGTGATGATGCTTATAAACCGGACTTGAGCAGCTGCGAGATGAATCCACAACAAACTAATAGTTTCTGGTCGGATTTCGGACCCATATTCGACCGCCTTCCGTTTGCTAATCATTTACTGGACGCGTCCAAGATCGACGGGCTTATTACTGGCGGCCCAACTGACATGGAGCTTCTGGAATTTGAAAGAATGAAGGTTGAAAGACAAATTTCAGCTTCACTTTATGCCATTAATGGAGTTCACGAGTACATGGAAACTCTTCAGGAATCTAATAACGAACCTATTTGGGATCTTCCACCTTTGTGCTCCTTATTCTGCTAA 804 0.4403 MEIHFQQPNLEHNNKSDKKNPGIGITKGNKFKGRSKTNNNNTTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSTDSPLASRIRNLLNDKKGIKKQENNVVSCAPRILGSTSSSSTNNDKIENSVPQVVRDDAYKPDLSSCEMNPQQTNSFWSDFGPIFDRLPFANHLLDASKIDGLITGGPTDMELLEFERMKVERQISASLYAINGVHEYMETLQESNNEPIWDLPPLCSLFC 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02108 267 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Adu06g02108 267 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Adu06g02108 267 MobiDBLite consensus disorder prediction 1 47 - -
Adu06g02108 267 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Adu06g02108 267 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Adu06g02108 267 CDD AP2 45 101 IPR001471 GO:0003700|GO:0006355
Adu06g02108 267 MobiDBLite consensus disorder prediction 31 47 - -
Adu06g02108 267 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 252 - -
Adu06g02108 267 Gene3D AP2/ERF domain 44 103 IPR036955 GO:0003700|GO:0006355
Adu06g02108 267 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERN2 26 252 - -
Adu06g02108 267 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Adu06g02108 267 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02108 Adu-Chr6 88156979 88157782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02108 30 267 AP2-EREBP Transcription Factor Family AT5G19790 44.664 5.88e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu06g02108 AP2 5.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02108 K09286 - gmx:100796898 313.923