Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01927 ATGACGGAGTGGCGAAAGACGATGACGAAGTGGTCGAGTGGTGAGAGAGTCAAAAACATAAGAACGATGATGGAGTGGCAACTGGCGAGAGACGATGATGAAATGGCGACAGAAATTGGTGAAGAGGAACGCATAACAAAAGTCTTCTTTCTTCACACCTCTTTCAAAGTCGATCCAACCACCAGCACCACCATCATGGGCAAGAAGCGGAAGGTTGCACCCAAATCATCTCAAACCGTTGAGCCCCCGCCCAAGCAGCACCAACCTGAACCTCAACAGGAATACGAAGAGGTTGAGGAAGAGGTAGAAGAAGAGGTCGAAGAAGAGGAGGAGGTAGAGGAAGAAGAGGAAGAGGAGGAGGAAGAAGAAGAAGAACAAGAAGGAGGTAACGAACAAAAGCAACAACAAGAGGACGAAGACGACGACCCCATTCCGAAGCTTCTAGAACCTTTTGGTAAGGACCAGATCTTGAGTCTTCTCTGCGAAGCGGCCGCCAAGCACCGCGACGTGGCCGATCGAATCCGTCGCGTGGCCGACGAGGACGCTGTCCACCGGAAGATCTTCGTCCACGGCCTTGGCTGGGACACCACCGCCGAGACCCTCATCAGTGCGTTCCGCCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCACCGATAAGATCTCCGGCAAGTCCAAGGGCTACGGATTCATCCTCTTCAAGACCCGCCGCGGCGCCCGCAATGCCCTCAAGCAGCCGCAGAAGAAGATCGGTAACCGCATGACAGCGTGCCAGCTGGCATCCATAGGCCCCGTCCAGCAGCCGGCACAGCAGCCTGCTGCCGCGGCCACCTCGTCAGGGCCGGCAGTCTCCGAATACACGCAGAGAAAGATCTATGTGAGCAACGTTGGGTCCGAATTGGACCCGCAGAAGCTGATGGCGTTCTTCTCGAGGTTCGGTGAGATCGAGGAAGGGCCATTGGGGCTCGACAAGGTCACTGGGAAGCCAAAGGGGTTCTGTTTGTTCGTTTACAAGAGCGTTGATAGTGCGAAGAGGGCGTTGGAGGAGCCTCACAAGGAATTTGAGGGACATGTGTTGCATTGCCAGAAGGCCATTGATGGACCGAAGCAAGGGAGGATGCAGCTGCAGCACAACGTTCCAAGGACGCAGTTTCAGAGGAACGACAACGCAGGGTTTGGTGCTGGTGTTGGTGGTGGCGTTGGTAACAATGTGCAGGGGCATTTGATGGCGCCAGCGGCTGCCGCAGCCAACCCTTTAGGGGTGAACCAAGCAGCTGTGCAGCCGCTGAATCCGGCACTCGGGCAGGCATTGACGGCCCTGCTTACTCAGCAGGGTGCTTCGTTGGGGCTCACCAATTTGTTGGGAGGTTTGGGATCAACTGCAGGGGCTGTTAATTCAGGCGTTCCAGCGGCAGCAGCACACACGATGCAGGGTGGTTACAGTGCTCAGCAGAATATAAGCCCTGGTGTTATGAGCGCGTACGGGAGTCAGGTAGGGCTGCAGGCAGCTTACCCGAACCAGCAGGTTTGTGTTGCAGATTACACCTAA 1548 0.5594 MTEWRKTMTKWSSGERVKNIRTMMEWQLARDDDEMATEIGEEERITKVFFLHTSFKVDPTTSTTIMGKKRKVAPKSSQTVEPPPKQHQPEPQQEYEEVEEEVEEEVEEEEEVEEEEEEEEEEEEEQEGGNEQKQQQEDEDDDPIPKLLEPFGKDQILSLLCEAAAKHRDVADRIRRVADEDAVHRKIFVHGLGWDTTAETLISAFRQYGEIEDCKAVTDKISGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPVQQPAQQPAAAATSSGPAVSEYTQRKIYVSNVGSELDPQKLMAFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSVDSAKRALEEPHKEFEGHVLHCQKAIDGPKQGRMQLQHNVPRTQFQRNDNAGFGAGVGGGVGNNVQGHLMAPAAAAANPLGVNQAAVQPLNPALGQALTALLTQQGASLGLTNLLGGLGSTAGAVNSGVPAAAAHTMQGGYSAQQNISPGVMSAYGSQVGLQAAYPNQQVCVADYT 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01927 515 MobiDBLite consensus disorder prediction 129 148 - -
Adu06g01927 515 Coils Coil 92 139 - -
Adu06g01927 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 372 IPR000504 GO:0003723
Adu06g01927 515 SMART rrm1_1 186 258 IPR000504 GO:0003723
Adu06g01927 515 SMART rrm1_1 290 362 IPR000504 GO:0003723
Adu06g01927 515 PANTHER - 78 508 - -
Adu06g01927 515 SUPERFAMILY RNA-binding domain, RBD 273 378 IPR035979 GO:0003676
Adu06g01927 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 360 IPR000504 GO:0003723
Adu06g01927 515 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 253 IPR000504 GO:0003723
Adu06g01927 515 Gene3D - 264 379 IPR012677 -
Adu06g01927 515 MobiDBLite consensus disorder prediction 54 149 - -
Adu06g01927 515 CDD RRM_RBM24_RBM38_like 289 364 - -
Adu06g01927 515 Gene3D - 84 263 IPR012677 -
Adu06g01927 515 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 262 IPR000504 GO:0003723
Adu06g01927 515 PANTHER GEO13361P1-RELATED 78 508 - -
Adu06g01927 515 MobiDBLite consensus disorder prediction 94 128 - -
Adu06g01927 515 SUPERFAMILY RNA-binding domain, RBD 185 267 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01927 Adu-Chr6 81151437 81154643 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01927 288 374 C2H2 Transcription Factor Family AT2G19380 34.091 1.76e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01927 K12741 - gmx:100784200 489.189