Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01876 ATGAGGGAGAGGCTGAACCCTAAAATCTCAATCCCATCGCTACTTCCATTCATCTCTTCGCCGCCATTGCCGCCAAGTCTCCTCCATCAATGTGTCGCCGGTGGAATACATGAAATCAAGACAAGGAAAAGATTGGCCCTGGTAGATATTGTGAGAGAACTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCAAATGTCCGAGTACAGTTGATTAATGGTTTGGCAGATATAGAGTATGGAGATTTGCATAATAATGTTTGGACTTTCCGTCATATATATCGAGGGCAACCAAAGCACCACATGCTTACAACTGAATGGAGTCTATTTGTCAGTAGAAAGAAGCTCTTTGCTGGAGACTCTGTTTTATTTATACGAGATGAAAAGCAACAGCTTCTTTTGGGCATTAGGCTAGCTAACAGGCAACCAGCCAACATATCATCCTCGGTATTGTCAAGCGATAGTATGCATATTGGGATTCTTGCGGCAGCTGCTCATGCCGCTGCAAATAATAGTCCCTTTACCGTCTTTTACAATCCTAGGGCTAGTCCTTCAGAGTTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGTGTTTCTATTCTCCTTTTCAGAATTTGTGAGATGGAAAAATTCACAATGGTGTAATTTGCAGTCGATAACAAGATTTACTGCAGAAGGAATAGGATCCGTGTGTGGAAGGTTATCTATTGGGACTGCTGAAAAGATTCCAGAATCAGAGATTATTGGTACAACTGATGCCAGGACGCATTTGTTGGAGCTATTTTATACGCTATATGTGCCAACTTTGATCCAATGGCAATGTTGTCATTTGCTTCTTATGTGGTAA 849 0.4122 MRERLNPKISIPSLLPFISSPPLPPSLLHQCVAGGIHEIKTRKRLALVDIVRELTMFVFKIKMPPNVRVQLINGLADIEYGDLHNNVWTFRHIYRGQPKHHMLTTEWSLFVSRKKLFAGDSVLFIRDEKQQLLLGIRLANRQPANISSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVFLFSFSEFVRWKNSQWCNLQSITRFTAEGIGSVCGRLSIGTAEKIPESEIIGTTDARTHLLELFYTLYVPTLIQWQCCHLLLMW 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01876 282 Gene3D - 60 138 IPR015300 -
Adu06g01876 282 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 77 199 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu06g01876 282 SMART B3_2 59 140 IPR003340 GO:0003677
Adu06g01876 282 SUPERFAMILY DNA-binding pseudobarrel domain 78 167 IPR015300 -
Adu06g01876 282 Pfam B3 DNA binding domain 77 137 IPR003340 GO:0003677
Adu06g01876 282 PANTHER AUXIN RESPONSE FACTOR 77 199 - -
Adu06g01876 282 CDD B3_DNA 82 129 IPR003340 GO:0003677
Adu06g01876 282 Pfam Auxin response factor 164 198 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Adu06g01876 282 SUPERFAMILY post-AAA+ oligomerization domain-like 27 80 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01876 Adu-Chr6 78991373 78994637 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01876 82 198 B3 DNA Binding Superfamily AT1G19850 74.359 1.86e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Adu06g01876 B3 2.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01876 - - adu:107494169 361.688