Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01832 ATGTCCGCCGCCGCCGGAGCTTCTAAACTCCATGAGTCGCCGCCGACGGAAGCTTCCGGCATCCCGAACCGGCCGCCGCCGAAGCGTCACCTCGCCTTCGCTTCGACCAAGCCGCCGTTTGCTCCGCTGGACGACTACCGCAGCTTCTCCGGTCCCCACTGTCGGAAAGCCTCCGATCAAGAACAGGAAGCCGTCGTTGTTCGTTCTCCATACATGAAGCGCAAGAGTGGAGGAACACAGGAGCAAAGTAATAGTCCTGGATATGCTAATACAGTTAATAGTCCTCTCCAAACCCCTGGATCTACAAAAGGAGGGAGAACATATAATAAGTCAAGGGCTTCTAAGGAAGGTAGATCCGTTCCACAAACACCCATCTTAGAGGCTGGATCCCCATCTCTTACTCCTAGCAGCTGCCGCTACGACAGTTCCTTAGGTCTCTTGACAAAAAAATTTGTCAATTTGCTCAAGCATGCAGAGGGTGGCAATCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGAAGGATATATGACATAACTAACGTGCTGGAAGGAATTGGTCTTATAGAGAAGAAGATCAAGAACAGAATACATTGGAAGGGGATTGATTGTTCTACATCTGGTGGGATAGATGATGATGTCTCTATGCTGAAGGAAGATGTTGAGAAACTTTCCTTGGAGGAGCACCGATTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGATTTTAAGTGAAGATGAAAACAATAAGAAGATGCTTTTCGTGACTGAAGATGATATCAAGTCCTTACCTGAATTCCAGAATGAAACTCTCATAGCAATTAAAGCTCCACATGGAACCACATTGGAAGTCCCTGAACCTGAGGAAGCTGTTGACTACCCACAGAGGAGATATAGGGTCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTTCCTTATCAGTCAATTTGAGGAGAAATTCGAAGAGATGAGCTTTCCACTTGCTTCAAGTTCAGGGTCCAACGAACATCAAGCAGCAGAACTGCTTCCTGTTGAATGCAATGATAAAGCCCCTGAAGCTCCAGCTCAACTCTCATCTAATACCTGCTCTGATCTGAACACTGTACAAGAATTTGCTGGTGGCATGATGAAAATTGTTCCTTCAGCCGCTGATACCGATGCAGATTACTGGCTTCTATCAGATGTTGAAGCTAGCATAACAGACATGTGGAAAACAGATTCTAGTGTAGATTGGGATGGTGTGGACATGCTTAATTCTGACTTTGTACTCATCTCGAGGCCACAGACTCCATCATCTGGGTTTGCTGAAGCACCATCAGCAGTAGCCAGCATCCCGCATAGGTGA 1362 0.4633 MSAAAGASKLHESPPTEASGIPNRPPPKRHLAFASTKPPFAPLDDYRSFSGPHCRKASDQEQEAVVVRSPYMKRKSGGTQEQSNSPGYANTVNSPLQTPGSTKGGRTYNKSRASKEGRSVPQTPILEAGSPSLTPSSCRYDSSLGLLTKKFVNLLKHAEGGNLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKIKNRIHWKGIDCSTSGGIDDDVSMLKEDVEKLSLEEHRLDDQIREMQERLRILSEDENNKKMLFVTEDDIKSLPEFQNETLIAIKAPHGTTLEVPEPEEAVDYPQRRYRVILRSTMGPIDVFLISQFEEKFEEMSFPLASSSGSNEHQAAELLPVECNDKAPEAPAQLSSNTCSDLNTVQEFAGGMMKIVPSAADTDADYWLLSDVEASITDMWKTDSSVDWDGVDMLNSDFVLISRPQTPSSGFAEAPSAVASIPHR 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01832 453 PANTHER TRANSCRIPTION FACTOR E2FB 25 436 - -
Adu06g01832 453 Gene3D - 134 206 IPR036388 -
Adu06g01832 453 SMART E2F_TDP_2 139 204 IPR003316 GO:0005667|GO:0006355
Adu06g01832 453 Gene3D - 211 321 - -
Adu06g01832 453 SUPERFAMILY E2F-DP heterodimerization region 216 321 IPR037241 -
Adu06g01832 453 MobiDBLite consensus disorder prediction 1 134 - -
Adu06g01832 453 Pfam E2F/DP family winged-helix DNA-binding domain 141 204 IPR003316 GO:0005667|GO:0006355
Adu06g01832 453 MobiDBLite consensus disorder prediction 75 118 - -
Adu06g01832 453 CDD E2F_DD 215 321 IPR032198 GO:0046983
Adu06g01832 453 Pfam E2F transcription factor CC-MB domain 220 320 IPR032198 GO:0046983
Adu06g01832 453 Coils Coil 224 251 - -
Adu06g01832 453 PANTHER TRANSCRIPTION FACTOR E2F 25 436 IPR015633 GO:0000978|GO:0006357
Adu06g01832 453 SUPERFAMILY "Winged helix" DNA-binding domain 139 202 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01832 Adu-Chr6 75026844 75031915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01832 22 451 E2F-DP Transcription Factor Family AT2G36010 56.652 4.84e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Adu06g01832 E2F_CC-MB 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01832 K06620 - gmx:100811762 618.616