Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01763 ATGCATAATATGCCTGGGACAAAGCAGAGTGATGAAACGGCCCAAAATCAAGAATCACCAGAGGGGCACAGTGAGCATGAAAAACCTACAGATTCTGATGAACAGGTAGACCTTGAAGGGGATAATGATCAAGAGGAGACCATGGAGGAAGAGGTTGAATATGAAGAAATAGAGGAAGAAGTCGAAGAGGAAGAAGAGGAAGAGGAGGAAGAGGAGGAAGAAGAAGAAGAGACTAAACCCTCAGATGGTGAAGAGGATATAGGAGTGGTAGACAATAAGGATGAAGATGAGAAAAAGAAACATGCAGAAGTTCTTGCACTTCCACCTCATGGGTCAGAGGTTTACATTGGTGGCATTCCTCACAAAGTTTCAGAAGAAGATTTGAGGGCCTTCTGTGAATCTGTGGGAGAAGTGTCAGAGGTTAGGATTATGAAAGGAAAAGATTCAGTTGAAGCAAAAGGTTATGCATTTGTGACCTTCAAGTCAAAGGAATTGGCATCTATGGCTATTGAGAAACTGAACAACACTGAATTTAAGGGAAGAAAAATAAGGTGCTCAACATCCCAAGCTAAGCATAAGTTGTTCATTGGTAATGTTCCTAGAAATTGGACTTTAGAAAATATGAAGAAGGTAGTCTCAGAAATTGGGCCTGGAGTTGTTGCTGTGGAGCTGTTGAAGGACCCACAGATTTCTGGCCGTAATAGGGGGTTTGCTTTTATTGAGTATTACAATCATGCTTGTGCAGAATATTCAAGGCAGAAGATGTCAAACCCAAAATTCAAACTAGACGACAATGCTCCAACTGTGAGTTGGGCTGACCCAAGGAATTCTGAATCATCTGCTGCGACTCAGGTAAAAGCAGTTTATGTAAAGAACCTTCCAGAGAATATTACTCAGGATCGTCTTAAGGCACTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTGTCCCTCCTGCTAAAGCAGGACAAGAAAAGAGCAGGTTTGGGTTTGTGCACTTTGCTGAAAGGTCAAGGCAATCTCTGGAGTGTTCACTTGCAAAGCCACAAGCAGATCAGAAGTCATCCAGTACACTAAATTCACAGAAGTCTGTTGTACTTCCCACTTATCCACCTCAACTTGGTTATGGCATGGTTGGAGGTGCATATTCTGGTATTGGCACAGGATTTGGTCCTGCTGGGTTCACACAACCACTGATGTATGGTGCAGGAGCAACCGCAGCTGGCATGGCAATGATGCCAATGCTGTTACCAGATGGAAGGATTGGATATGTATTGCAACAGCCAGGGTTGCAACCACATACTCCTCCTCCGCCAGTATCCAGACATGGCAAGAGCAGCGGTGGTAGCTCAAGTAGTGGGAAACGTGGAAATGATAATAGCCATAACCGTGGCCGTGGCCGTGGTCGGCGCCAAGCACCGGTTAGCACAGGGAGGAACTGCTGCGAACGATTTATGTTTCTAAGATGCATTATCTTGTTAAATTTAATGCTAAGATTTCTCTCTCCGGATGTTCATCACATTTTTTGGTAG 1533 0.439 MHNMPGTKQSDETAQNQESPEGHSEHEKPTDSDEQVDLEGDNDQEETMEEEVEYEEIEEEVEEEEEEEEEEEEEEEETKPSDGEEDIGVVDNKDEDEKKKHAEVLALPPHGSEVYIGGIPHKVSEEDLRAFCESVGEVSEVRIMKGKDSVEAKGYAFVTFKSKELASMAIEKLNNTEFKGRKIRCSTSQAKHKLFIGNVPRNWTLENMKKVVSEIGPGVVAVELLKDPQISGRNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPRNSESSAATQVKAVYVKNLPENITQDRLKALFEHHGKITKVVVPPAKAGQEKSRFGFVHFAERSRQSLECSLAKPQADQKSSSTLNSQKSVVLPTYPPQLGYGMVGGAYSGIGTGFGPAGFTQPLMYGAGATAAGMAMMPMLLPDGRIGYVLQQPGLQPHTPPPPVSRHGKSSGGSSSSGKRGNDNSHNRGRGRGRRQAPVSTGRNCCERFMFLRCIILLNLMLRFLSPDVHHIFW 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01763 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Adu06g01763 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 260 IPR000504 GO:0003723
Adu06g01763 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 337 IPR000504 GO:0003723
Adu06g01763 510 MobiDBLite consensus disorder prediction 1 99 - -
Adu06g01763 510 SUPERFAMILY RNA-binding domain, RBD 108 192 IPR035979 GO:0003676
Adu06g01763 510 CDD RRM_SF 114 186 - -
Adu06g01763 510 Gene3D - 193 268 IPR012677 -
Adu06g01763 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Adu06g01763 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 274 IPR000504 GO:0003723
Adu06g01763 510 SUPERFAMILY RNA-binding domain, RBD 192 337 IPR035979 GO:0003676
Adu06g01763 510 MobiDBLite consensus disorder prediction 18 35 - -
Adu06g01763 510 PANTHER - 16 470 - -
Adu06g01763 510 MobiDBLite consensus disorder prediction 83 99 - -
Adu06g01763 510 MobiDBLite consensus disorder prediction 36 82 - -
Adu06g01763 510 Coils Coil 44 79 - -
Adu06g01763 510 Gene3D - 34 192 IPR012677 -
Adu06g01763 510 SMART rrm1_1 113 186 IPR000504 GO:0003723
Adu06g01763 510 SMART rrm1_1 287 367 IPR000504 GO:0003723
Adu06g01763 510 SMART rrm1_1 193 270 IPR000504 GO:0003723
Adu06g01763 510 PANTHER GEO13361P1-RELATED 16 470 - -
Adu06g01763 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 338 IPR000504 GO:0003723
Adu06g01763 510 SMART rrm2_1 113 186 IPR003954 GO:0003676
Adu06g01763 510 MobiDBLite consensus disorder prediction 1 17 - -
Adu06g01763 510 MobiDBLite consensus disorder prediction 426 476 - -
Adu06g01763 510 Gene3D - 269 343 IPR012677 -
Adu06g01763 510 MobiDBLite consensus disorder prediction 444 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01763 Adu-Chr6 70064410 70068274 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01763 112 342 Eukaryotic Initiation Factors Gene Family AT4G34110 29.960 2.78e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01763 K13161 - gmx:100798476 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01763 06 70064410 70068274 Adu06g01763 06 70064410 70068274 ECH