Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01741 ATGGAGAGGTTGGAACTAAAGGAAATTCAGAGACTCGAAGGCCACACTGATAGGGTTTGGAGCTTGGCTTGGAACCCCGTCACCGGCCACAACGGTGTCCCACTCCTCTTTGCCTCTTGCAGTGGCGACAAAACTATTCGAATCTGGGAACAGAACCTCTCCTCTGGTGTCTGGTCCACCAAGGCGGTTTTGGATGAGCCGCACACTCGAACCGTTCGGTCGTGCGCTTGGTCACCTTCTGGTAAGCTGCTGGCCACGGCAAGTTTTGATGCCACTACAGCTATATGGGAGAATGTTGGGGGTGATTACGAGTGTGTCTCCACTTTGGAGGGTCATGAACACGAAGTGAAGAGTGTGTCTTGGAATGCATCTGGAAACCTACTTGCAACGTGTAGTAGAGATAAATCTGTTTGGATATGGGAAGTGCTGCCAGGGAATGAATTTGAGTGTGTGTCAGTGTTGCAAGGACATACCCAAGATGTGAAAATGGTGAAATGGCATCCAACAATGGATATCTTATTTTCATGTAGTTATGATAACACTATTAAGGTTTGGGCAGATGAAGGTGATAGTGACGATTGGCAATGCATTCAAACAATAGGAGAACCGAATAATGGTCATACTTCAACTGTTTGGGCACTCTCTTTCAATGCCAGTGGTGATAAAATGGTTACTTGCAGTGATGATCTTACGCTTAAGATATGGGAATCAGAAAATATAGGGATGCAATCTGGTGGTGGATTCAGACATTGGAGACATTTTTGCACTCTTACAGGGTATCATGATCGGACAATTTTCTCTGTTCATTGGTCAAGAGAAGGTATCTTTGCTAGTGGAGCTGCCGATGATGCTATACGTCTTTTTGTGGATGACAATGAAAGTCAAGTGGATGGTCCTCTGTACAAGTTGCTGCTGAAGAAGGAAAAGGCCCATGATATGGACATAAATTCAGTGCAATGGAGCCCTGGGGTAAGATTCTTGGACATTGCTTTAATGGAATCAACCAAAAGTGATTCTCTTTGGTAG 1026 0.4503 MERLELKEIQRLEGHTDRVWSLAWNPVTGHNGVPLLFASCSGDKTIRIWEQNLSSGVWSTKAVLDEPHTRTVRSCAWSPSGKLLATASFDATTAIWENVGGDYECVSTLEGHEHEVKSVSWNASGNLLATCSRDKSVWIWEVLPGNEFECVSVLQGHTQDVKMVKWHPTMDILFSCSYDNTIKVWADEGDSDDWQCIQTIGEPNNGHTSTVWALSFNASGDKMVTCSDDLTLKIWESENIGMQSGGGFRHWRHFCTLTGYHDRTIFSVHWSREGIFASGAADDAIRLFVDDNESQVDGPLYKLLLKKEKAHDMDINSVQWSPGVRFLDIALMESTKSDSLW 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01741 341 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Adu06g01741 341 PRINTS G protein beta WD-40 repeat signature 128 142 IPR020472 -
Adu06g01741 341 PRINTS G protein beta WD-40 repeat signature 37 51 IPR020472 -
Adu06g01741 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 65 97 - -
Adu06g01741 341 Gene3D - 35 339 IPR015943 GO:0005515
Adu06g01741 341 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 4 323 - -
Adu06g01741 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 142 - -
Adu06g01741 341 SMART WD40_4 193 236 IPR001680 GO:0005515
Adu06g01741 341 SMART WD40_4 102 141 IPR001680 GO:0005515
Adu06g01741 341 SMART WD40_4 250 289 IPR001680 GO:0005515
Adu06g01741 341 SMART WD40_4 147 186 IPR001680 GO:0005515
Adu06g01741 341 SMART WD40_4 57 97 IPR001680 GO:0005515
Adu06g01741 341 SMART WD40_4 5 50 IPR001680 GO:0005515
Adu06g01741 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 142 IPR001680 GO:0005515
Adu06g01741 341 SUPERFAMILY WD40 repeat-like 4 326 IPR036322 GO:0005515
Adu06g01741 341 CDD WD40 8 327 - -
Adu06g01741 341 PANTHER WD40 PROTEIN CIAO1 4 323 IPR028608 GO:0016226|GO:0097361
Adu06g01741 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 204 236 - -
Adu06g01741 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 65 97 IPR001680 GO:0005515
Adu06g01741 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 12 50 - -
Adu06g01741 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 204 236 IPR001680 GO:0005515
Adu06g01741 341 ProSitePatterns Trp-Asp (WD) repeats signature. 128 142 IPR019775 -
Adu06g01741 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 154 185 IPR001680 GO:0005515
Adu06g01741 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 50 IPR001680 GO:0005515
Adu06g01741 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 154 185 - -
Adu06g01741 341 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 4 341 IPR028608 GO:0016226|GO:0097361
Adu06g01741 341 Pfam WD domain, G-beta repeat 149 185 IPR001680 GO:0005515
Adu06g01741 341 Pfam WD domain, G-beta repeat 8 49 IPR001680 GO:0005515
Adu06g01741 341 Pfam WD domain, G-beta repeat 104 140 IPR001680 GO:0005515
Adu06g01741 341 Pfam WD domain, G-beta repeat 68 96 IPR001680 GO:0005515
Adu06g01741 341 Pfam WD domain, G-beta repeat 194 235 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01741 Adu-Chr6 68297533 68301877 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01741 80 330 U-box Gene Family AT2G33340 26.693 2.47e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01741 K24730 - aip:107645668 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01741 06 68297533 68301877 Adu06g01741 06 68297533 68301877 ECH