Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01616 ATGAAGCTGTGTCGTCGTAATTGGAAGCTCCCTCGCCGTCGTTTGGAAGCTCGTTGGCCGTCTCCTCTGTTCAAGCGCTCTCCTTCTCTCTATTTGGCAGATTCAACAACTGTCTCTTTGCTCTTCTCCAAGTTAGGAACAAGTACAAAAGGTGCTGAATTAAGGAGAGAAGAGAGAAAATTTTGGAGAAGGAGTATTAAATGCAAGGATTCTTCTTATGTTAAGATATTTGGCAGCATTAAATCAGTGGGAGGAGGCCTTGCTTTAGGTAAAGAGGGTCCTCTTGTCCATACTGGTGCTTCTATTGCTTCTTTGCTTGGACAAGTATTGAGAAGTGCTCGAGATCGTCGAGATTTGGTAACCTGTGGGTGTGCAGCAGGAGTTGCTGCTGCATTTAGAGCTCCTGTTGGTGGTGTATTCTTTGCATTGGAAGAGATTAATGAAGCATGCCATGTCTCCCTTCTAACGTCAATTATTTCATTTTGCTTACTTCTAAGAGAATGTAGTCCATGCCCAGAATCTGATCCTACTTCTGGTATTGAATGCCCACGTCCTCCTGGAATGTATAGGAATTATGTAAATTTCTTTTGTAGCAGTGACAATGAGTATAATGATCTTGCGACTATTTTCTTCAATACACGGGTTATGTTTTATACTTTAGCAGTGTTGACGTTTGGTACTACTATGCCAGCCGGTCAATTTGTCCCTAGTATAATGATAGGATCAACTTATGGACGTCTTGTTGGCATGTTTGTTGTAAAATATTACAAAAAGCTCAATATTGAAGAGGGAATGTATGCTATGCTAGGAGCTGCATTTTTTCTTGGTTGTTCAATGCGGATGACAATGTCTCTTTGTGTCATTATGGTTGAAATAACAAATAACCTGAAACCTTTGCCCCTTATTATGCTTGTTCTTCTTATATTGAAGGATGTGGGTGATACTTTTAATGAGGGTCTATATGAAGAGCAGGCAAGATTAAGGGGCATTCTATTACTGGAATCAAGGCCTAAATATGAGATACGGAACATGACAGCAAAGGAGGCCTGTGGAAGTGGAAGGGTGATCTTGTTACCTCGGGTAGTTAAGGTTTCAGACGTAGTGTCCATTCTACAGAGCAACAAACACAATGGTTTTCCAAAATGGAGAATCACTTGTTATTGGATTAGTACTTCGGAGTCATTTGTTGGTAATCCTTCAGTCAAAGGTTGA 1212 0.4068 MKLCRRNWKLPRRRLEARWPSPLFKRSPSLYLADSTTVSLLFSKLGTSTKGAELRREERKFWRRSIKCKDSSYVKIFGSIKSVGGGLALGKEGPLVHTGASIASLLGQVLRSARDRRDLVTCGCAAGVAAAFRAPVGGVFFALEEINEACHVSLLTSIISFCLLLRECSPCPESDPTSGIECPRPPGMYRNYVNFFCSSDNEYNDLATIFFNTRVMFYTLAVLTFGTTMPAGQFVPSIMIGSTYGRLVGMFVVKYYKKLNIEEGMYAMLGAAFFLGCSMRMTMSLCVIMVEITNNLKPLPLIMLVLLILKDVGDTFNEGLYEEQARLRGILLLESRPKYEIRNMTAKEACGSGRVILLPRVVKVSDVVSILQSNKHNGFPKWRITCYWISTSESFVGNPSVKG 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01616 403 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 146 380 - -
Adu06g01616 403 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 146 380 - -
Adu06g01616 403 SUPERFAMILY Clc chloride channel 73 334 IPR014743 -
Adu06g01616 403 Pfam Voltage gated chloride channel 215 308 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Adu06g01616 403 Pfam Voltage gated chloride channel 38 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Adu06g01616 403 PRINTS Chloride channel signature 125 144 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Adu06g01616 403 PRINTS Chloride channel signature 75 94 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Adu06g01616 403 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 74 146 - -
Adu06g01616 403 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 74 146 - -
Adu06g01616 403 Gene3D Clc chloride channel 52 167 - -
Adu06g01616 403 Gene3D Clc chloride channel 180 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01616 Adu-Chr6 50795780 50800124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01616 145 380 Ion Channels AT5G26240 72.137 2.68e-115 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01616 K05016 - gmx:100811908 372.089