Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01577 ATGGAGCAGCAGGAGGAAGAGGAACATGTGGTGCGCAGCAACAATAATAACAACAATGATCACATGCAAATTATGATGAAGGGCAAGCGCACCAAGCGTCAGAGGCTACCTTCCCCACTTAGGTTAGCTATGGCCATGCCTTCTTCAACTTCTTCAACCTCCTCTTTCGGTTTGGATACCCCAACAACAACCGCAAGAACGGAAGATGAGGATAATAACGACGAAGACATGGCGAATTGCTTGATCCTCCTGGCTCAAGGCGGCGGAGGCCGGGTAACCCGCCATAATAACAAAAAAGAAAGCATATTCAACCTTTACGATTGCAAGACTTGTAACCGAAGCTTCCCTTCCTTCCAAGCTTTGGGAGGACACAGAGCCAGCCACAAGAAGCCCAAGATCTTAACAAACAGTAGTAGTGTTATTACTACAGAAGAGAATTACAATAATGACCCTACAAGCACCGCCCTCACCTTGCAAATATCAAACAGCTCCATGTACTGCCGCAGCACCACCACCACCAAAACAACAACCGCCATGGAAACCCCTGCTCCTATTTCCAAGACAAGTAAGGTTCATGAATGTTCCATTTGCGGTGCCGAATTCACTTCTGGCCAAGCTTTGGGTGGTCATATGAGGAGGCACAGGGGTTTCTTGACCGTTTCTTCCGCCACAGCCGCAACCACAACCACCACCACTACAGCTACATCATCATCTATTAGTGGTGCTAATGCTGATCATCAAGAGACCAAGAACAATAATAATAATGTCAACAAGAATATTTTGAAGCTGGACCTCAATCTTCCGGCACCGGAAGATGATCATCACAACAGGGTATCAAAGTTCTCGTTCCAGTCCAAAGAGAAAGTTATTGTGTTCTCTTCTGCAGCTTCTCTCGTAGATTGCCATTATTAG 912 0.4627 MEQQEEEEHVVRSNNNNNNDHMQIMMKGKRTKRQRLPSPLRLAMAMPSSTSSTSSFGLDTPTTTARTEDEDNNDEDMANCLILLAQGGGGRVTRHNNKKESIFNLYDCKTCNRSFPSFQALGGHRASHKKPKILTNSSSVITTEENYNNDPTSTALTLQISNSSMYCRSTTTTKTTTAMETPAPISKTSKVHECSICGAEFTSGQALGGHMRRHRGFLTVSSATAATTTTTTTATSSSISGANADHQETKNNNNNVNKNILKLDLNLPAPEDDHHNRVSKFSFQSKEKVIVFSSAASLVDCHY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01577 303 SUPERFAMILY beta-beta-alpha zinc fingers 105 214 IPR036236 -
Adu06g01577 303 Coils Coil 239 259 - -
Adu06g01577 303 SMART c2h2final6 192 214 IPR013087 -
Adu06g01577 303 SMART c2h2final6 106 128 IPR013087 -
Adu06g01577 303 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Adu06g01577 303 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 12 303 - -
Adu06g01577 303 PANTHER ZINC FINGER PROTEIN ZAT5 12 303 - -
Adu06g01577 303 MobiDBLite consensus disorder prediction 45 72 - -
Adu06g01577 303 MobiDBLite consensus disorder prediction 235 254 - -
Adu06g01577 303 Pfam C2H2-type zinc finger 106 131 - -
Adu06g01577 303 Pfam C2H2-type zinc finger 191 215 - -
Adu06g01577 303 MobiDBLite consensus disorder prediction 45 63 - -
Adu06g01577 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Adu06g01577 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 192 216 IPR013087 -
Adu06g01577 303 ProSitePatterns Zinc finger C2H2 type domain signature. 194 214 IPR013087 -
Adu06g01577 303 MobiDBLite consensus disorder prediction 1 22 - -
Adu06g01577 303 Gene3D Classic Zinc Finger 104 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01577 Adu-Chr6 43525820 43526990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01577 18 303 C2H2 Transcription Factor Family AT5G03510 38.291 2.83e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu06g01577 zf-C2H2_6 2e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01577 - - adu:107494043 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01577 06 43525820 43526990 Adu03g00082 03 728178 729209 ECH
Adu06g01577 06 43525820 43526990 Adu06g01577 06 43525820 43526990 ECH
Adu08g01392 08 23565489 23566565 Adu06g01577 06 43525820 43526990 ECH
Adu06g01577 06 43525820 43526990 Adu08g01392 08 23565489 23566565 ECH