Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01559 ATGGGACACCGGAATTTATGTAACGAAATTTCCAATACCAATGAATCTAAGAAATTCAGGATTCGCGAAGACGTAGAACCGAATGCCAAGCTTCCAATGAAAGAAAATAACGGAACAAAAATTTTGGCGGGAAAGAAGAACAAGTGTTCCGAACCGAAATGCGAGCTCAGCGTTTCGATGGTTAGGCCATTTAAGCGGTTTACACGACGGTCGGCGGCACTGGAAGGGAAAGTCGTTTCGAATGATGTTGGTGGAGAGGTGAGCGGGATATCGAGGAACAAGTTGGAAATGAAGATGTCGAAGAAGATTGTGGTCAACAAGACGCCCATGACGGTGAAGGAGCTCTTCCACACTGGTCTTCTTGATGGGGTCTCGGTGGTTTACATGGGCGGTATTAAGAAGGCTTCAGGATTACGGGGTGTTATAAGAGATCTGGGAATATTGTGCTCATGCTCTCTGTGCAATGAACGCAGGATTATTCCGCCTTCCAAATTCGAGGTCCATGCTTGTGGACAATACAGGAGAGCAGCAGAGTATATCTGCCTTGAAAATGGGAAGAGCTTGCTTGATCTATCGAGAACGTGCAGGGGAGTTCCTCTGTATGATTTGGAGGCGACAGTTCAAAACTTTCTTCGTTCTCCGCATGAAGAAAAACATTTTACTTGTAAAAGATGCAAAGGGTGTTTCCCTTTCTCATGTGCGGCAAGAGTGGGGCCCATATGCTGTTATTGTGTTGAATCGAGGAAATCCGAAGACAGTTCTGATAAGGCAGTTAGCAAGAGAGTCAGGTCCCCCAGACCAATGTCTGTCTCCAATCCATCCAATGCTCCTGAGCTGTCTATTGCTTCAGAAAATAAAAGAAAAAGGAAAAAAAGAACAAAGTCATCAAAATGGGCTAACAAGTCAAAGTCTTCCAAGAGTGCTTCTATTCCTATTCTACCAAAGACGACGACTTCATGGAAGATGAGAAAGAAGAAGCTGTCAGGAAACTCGGAGATTCTGGAAGTTACTTCAAATGCTAAGTGTTTATCCCCACAAAATAAGAGCCAATGGAAAATAACTAAGAAGGATCAGCGGTTGCATAAGTTAGTTTTTGAAGAGAATGGATTACCTGATGGAACTGAAGTTGCTTATTATGCCCGTGGGAAGAGATTGCTTGAAGGCTTTAAAATGGGCTCTGGAATTGTTTGCAGATGCTGCGACTCTGAGGTCAGCCCTTCACAGTTTGAGGCCCATGCAGGTTGCGCTTCTCGCAAGAAACCTTATGCTTACATTTATACATCAAATGGTGTATCTCTCCATGAGTTAGCAATATCTCTCTCCAAAGATCGAAAATATTCGGCAACAGATAACGATGATCTATGCATTGTTTGTTGGGATGGTGGAAATTTGTTGCTTTGTGATGGATGCCCAAGAGCATTTCATAAAGAATGTGCATCTCTATCAAGTATTCCACGCGGTGACTGGTATTGTGAATTTTGCCAAAACATGTTTCAGAGAGAGAAGTTTGTGGCGTACAATTCCAATGCTGTTGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATCCAAGCAATAACAAACAGATGCATACGCATAGTCAAAGATGTTGAAGCTGACCTTGGTGCATGTGCTTTATGCAGAGGTGTTGACTTCAGCAGATCCGGCTTTGGCCCACGCACCATTATACTATGTGACCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGAACATAAGATAGCATATTTGAAGGAATTGCCAGTGGGGAAGTGGCTTTGTTGTAATGATTGTACAAGAATACATTCTACTTTGGAGAACCTTCTGGTCATGGGTGCTGAGAGACTCCCTGAATCTCTACTGGGAATTATAAAGAAAAAGCAAGAGGAGAAAGGACTGGAACCCCTCAATGATATTGACGTAAGATGGAAGCTTCTTAATGGGAAAATTGCTTCTCGTGAAACCAGGCCATTGCTTTTGGAGGCTGTTTCAATCTTCCACGAATGTTTCAGTCCCATAGTTGATGCAATTAGTGGACGGGACTTTATTTCAGCCATGGTTTATGGAAGGAATATTCGGGGGCAGGAGTTTGGAGGAATGTATTGTGCAGTATTAATGGTCAATTCATATGTGGTATCTGTGGGCATGCTTCGAATTTTTGGCAAAGATATTGCCGAACTCCCCTTGGTTGCAACCACTAACAAGGACCACGGAAAGGGTTACTTCCAAACACTCTTCTCTTGCATTGAGAGGCTGCTTTCTTTCTTGAATGTGAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCAGAATCGATATGGACAAATAAATTTGGATTTAGCAAGATGATACCAGACCAGCTTATCAGCTACAGAAAGAATTGCCATCAGATGGTGACATTCAAAGGAACAGAGAGTGAAAAGAGAGGATACGCCGCCTTTCAATCCCATTGCTGCCCATGGAGTTGCGAGGAGCACCGCCACCATCGTCGTGGCGTGTGGGCTTCGTGCAGAGAAGAGATTGAATGTAACGAGAGAGGGTGGGGGACCGTTTCGCCGCTGCCTGGGTTCCTGTGGTCCAAGCTGCCATCAATAGAGCTCGCCAAAAATGTTCAGAGGTTTTTGCCACTTACTCTGATTCTGTTATGTTATGAAAACGTCACTGCTACCACTGGAATCATGAACAAAAAAGGAGAGGAGGCCGTTTAA 2706 0.4401 MGHRNLCNEISNTNESKKFRIREDVEPNAKLPMKENNGTKILAGKKNKCSEPKCELSVSMVRPFKRFTRRSAALEGKVVSNDVGGEVSGISRNKLEMKMSKKIVVNKTPMTVKELFHTGLLDGVSVVYMGGIKKASGLRGVIRDLGILCSCSLCNERRIIPPSKFEVHACGQYRRAAEYICLENGKSLLDLSRTCRGVPLYDLEATVQNFLRSPHEEKHFTCKRCKGCFPFSCAARVGPICCYCVESRKSEDSSDKAVSKRVRSPRPMSVSNPSNAPELSIASENKRKRKKRTKSSKWANKSKSSKSASIPILPKTTTSWKMRKKKLSGNSEILEVTSNAKCLSPQNKSQWKITKKDQRLHKLVFEENGLPDGTEVAYYARGKRLLEGFKMGSGIVCRCCDSEVSPSQFEAHAGCASRKKPYAYIYTSNGVSLHELAISLSKDRKYSATDNDDLCIVCWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCEFCQNMFQREKFVAYNSNAVAAGRVEGVDPIQAITNRCIRIVKDVEADLGACALCRGVDFSRSGFGPRTIILCDQCEKEYHVGCLREHKIAYLKELPVGKWLCCNDCTRIHSTLENLLVMGAERLPESLLGIIKKKQEEKGLEPLNDIDVRWKLLNGKIASRETRPLLLEAVSIFHECFSPIVDAISGRDFISAMVYGRNIRGQEFGGMYCAVLMVNSYVVSVGMLRIFGKDIAELPLVATTNKDHGKGYFQTLFSCIERLLSFLNVKNLVLPAAEEAESIWTNKFGFSKMIPDQLISYRKNCHQMVTFKGTESEKRGYAAFQSHCCPWSCEEHRHHRRGVWASCREEIECNERGWGTVSPLPGFLWSKLPSIELAKNVQRFLPLTLILLCYENVTATTGIMNKKGEEAV 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01559 901 MobiDBLite consensus disorder prediction 265 281 - -
Adu06g01559 901 Pfam Tify domain binding domain 140 193 IPR032308 -
Adu06g01559 901 Pfam Tify domain binding domain 392 438 IPR032308 -
Adu06g01559 901 Pfam PHD-finger 455 496 IPR019787 -
Adu06g01559 901 PANTHER AUTOIMMUNE REGULATOR 22 805 - -
Adu06g01559 901 SUPERFAMILY FYVE/PHD zinc finger 533 596 IPR011011 -
Adu06g01559 901 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 22 805 - -
Adu06g01559 901 ProSitePatterns Zinc finger PHD-type signature. 455 494 IPR019786 -
Adu06g01559 901 MobiDBLite consensus disorder prediction 300 315 - -
Adu06g01559 901 SUPERFAMILY FYVE/PHD zinc finger 441 500 IPR011011 -
Adu06g01559 901 ProSiteProfiles Zinc finger PHD-type profile. 452 497 IPR019787 -
Adu06g01559 901 MobiDBLite consensus disorder prediction 255 315 - -
Adu06g01559 901 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 693 780 IPR016181 -
Adu06g01559 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 440 530 IPR013083 -
Adu06g01559 901 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 539 601 IPR013083 -
Adu06g01559 901 SMART PHD_3 454 495 IPR001965 -
Adu06g01559 901 SMART PHD_3 542 599 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01559 Adu-Chr6 40351343 40363403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01559 101 802 PHD Transcription Factor Family AT2G36720 53.696 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Adu06g01559 TDBD 3.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01559 - - gmx:100802562 1191.02