Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01552 ATGGAGCCTTTGACTCAGGATTTCTACAACGCAAACAAATTTGCCAAGCTTGTGAGAAGAAGAGAGTTCATGGCCAGCGCTGCCGAGGGAACCACCGGGGCTCTTACCTGTGCCACTTGTGGCTGCCATAGAAACTTCCATAGAAGAAAGGAACTAGCTGCACCATCCAGTTCTGTCCTTTGGCCTACTGCTTACAGCATTGAGAAGCCGAAAAGCAAGGTCTTGGCGTCGAGAGACAGTGCCTATGTTAGGCTGTACACAATTCCCCAGAACAGTGCCTTAATATTGAATTTCACTTACGCCTCAACGCAGCAGCACAAAGATATGGAGACCTTTCTCTTCACCTCCGAATCTGTAAATGAAGGTCACCCTGACAAGATCTGTGACCAGGTTTCGGATGCCATCCTTGATGCTTGTTTGGAGCAAGACCCGGAGAGCAAGGTTGCCTGTGAGACCTGTACAAAAACCAACATGGTTATGGTCTTTGGTGAGATCACAACCAAGGCAAATGTGAACTATGAGAAAATAGTTCGAGACACTTGCAGAGGCATTGGGTTCGTTTCAGCTGATGTCGGTCTTGATGCTGACAACTGCAAAGTTCTGGTCAAGATTGAGCAACAGAGCCCTGATATTGCCCAAGGAGTTCATGGTCACATGACTAAAAAGCCTGAGGAAATTGGTGCTGGTGACCAGGGACACATGTTTGGCTATGCCACAGATGAAACACCTGAGCTAATGCCACTTACTCATGTCCTTGCTACTAAACTTGGTGCCAAGCTCACTGAAGTTAGAAAGAACAAAACATGCCCATGGGTGAGACCTGATGGAAAAACTCAGGTTACTGTTGAGTACAAGAATGATAATGGAGCCATGATCCCGATTCGTGTGCACACTGTCCTCATCTCAACACAACATGATGAAACTGTCACCAATGACAAGATAGCCAGCGATTTGAAGGAGCATGTAATAAAACCTGTCATCCCAGCTAAATACCTTGATGACAAGACTATCTTCCACCTCAACCCTTCTGGTCGTTTTGTGATTGGTGGACCCCATGGAGATGCAGGGCTAACTGGCCGTAAGATCATCATTGACACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCCGGCAAGGACCCAACCAAGGTCGATAGGAGTGGTGCATACATTGTTAGGCAAGCAGCGAAAAGTGTGGTAGCTTCAGGGCTTGCTCGACGCTGTCTTGTGCAGGTTTCTTATGCAATTGGAGTCCCAGAGCCACTCTCTGTTTTTGTAGACACCTACAAAACAGGAAAGATTCCAGACAAGGACATATTAGCTCTAATTAAGGAAAATTTTGACTTCAGGCCAGGAATGATTGCCATCAATCTTGACCTCATGAGAGGAGGCAACTTCAGGTACCAGAAGACTGCTGCTTACGGACATTTCGGACGTGACGATCCTGATTTCACTTGGGAGACGGTGAAGATGCTCAAGCCCAAGGCTTGA 1497 0.4729 MEPLTQDFYNANKFAKLVRRREFMASAAEGTTGALTCATCGCHRNFHRRKELAAPSSSVLWPTAYSIEKPKSKVLASRDSAYVRLYTIPQNSALILNFTYASTQQHKDMETFLFTSESVNEGHPDKICDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKANVNYEKIVRDTCRGIGFVSADVGLDADNCKVLVKIEQQSPDIAQGVHGHMTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWVRPDGKTQVTVEYKNDNGAMIPIRVHTVLISTQHDETVTNDKIASDLKEHVIKPVIPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKENFDFRPGMIAINLDLMRGGNFRYQKTAAYGHFGRDDPDFTWETVKMLKPKA 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01552 498 Pfam S-adenosylmethionine synthetase, C-terminal domain 348 489 IPR022630 GO:0004478|GO:0006556
Adu06g01552 498 Gene3D - 112 350 - -
Adu06g01552 498 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 2 109 498 - -
Adu06g01552 498 Pfam S-adenosylmethionine synthetase, N-terminal domain 112 209 IPR022628 GO:0004478|GO:0006556
Adu06g01552 498 ProSitePatterns S-adenosylmethionine synthase signature 2. 374 382 IPR022631 GO:0004478|GO:0006556
Adu06g01552 498 ProSitePatterns S-adenosylmethionine synthase signature 1. 227 237 IPR022631 GO:0004478|GO:0006556
Adu06g01552 498 TIGRFAM metK: methionine adenosyltransferase 113 495 IPR002133 GO:0004478|GO:0005524|GO:0006556
Adu06g01552 498 CDD S-AdoMet_synt 113 492 - -
Adu06g01552 498 SUPERFAMILY S-adenosylmethionine synthetase 348 495 IPR022636 GO:0004478|GO:0006556
Adu06g01552 498 Pfam ZF-HD protein dimerisation region 21 51 IPR006456 -
Adu06g01552 498 SUPERFAMILY S-adenosylmethionine synthetase 111 217 IPR022636 GO:0004478|GO:0006556
Adu06g01552 498 Hamap S-adenosylmethionine synthase [metK]. 110 498 IPR002133 GO:0004478|GO:0005524|GO:0006556
Adu06g01552 498 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 109 498 IPR002133 GO:0004478|GO:0005524|GO:0006556
Adu06g01552 498 SUPERFAMILY S-adenosylmethionine synthetase 223 347 IPR022636 GO:0004478|GO:0006556
Adu06g01552 498 Gene3D - 225 489 - -
Adu06g01552 498 Gene3D - 119 387 - -
Adu06g01552 498 Pfam S-adenosylmethionine synthetase, central domain 225 346 IPR022629 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01552 Adu-Chr6 39374976 39387686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01552 21 50 ZF-HD Transcription Factor Family AT1G74660 70.000 2.24e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Adu06g01552 S-AdoMet_synt_C 1.4e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01552 K00789 - csv:101222328 765.763