Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01539 ATGGACAATCCCTTCGACCACCATGTTCCTCCGCCACACGCCACCGTCACCGCAGCTGACTACGGAGTCTCCGATGACGACGAGGACGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGATGACAACGAAGAGGACGAAGATTCATCGCCTAGGGCTTTCCCAGTGGCTCCTTCCACAACTTCTAATCCACAGCCAATTGTTATCACCGTGGAATCGCAGTCGCATAGCAGCTTCGGAGACGACGAAGTAAGCAACAAGCGCCGCAAAACGGAAGGCCGAGAGGCGTCGTCTTCGTCTTTGGCAATTGATGGCAGTCAAGGCAGCGAGTGGAACCGCACTGACATTGACGGCCTCTTCTGCCCTATCTGTATGGAAGCTTGGACCAACAGCGGCGACCACCAAATCTGTTGTCTTCCTTGTGGACACATATATGGTATGTCTTGTATAAAAAGATGGCTTCAACAGCGACGAAGTACAGGCAAGTGTCCACAATGCAATATAAAATGCTCATTAAAGGATGTGAGGAAGCTCTATGCATCTCGAGTAGTTACTGTTGATGATGAATCTCAGAAGAAAATAACTCAATTATCAATATGTTCTAAGGGTGCTGATTGGCGTGTGAAAGAGGCTATATGGCGGAAAAGAGAAGCTGCATACCGTCTGGAAATCCAGAAGCTTAAAGCGTTTCTAGTTTTGATCTTGCTGAGAAATACTAATTTGGAGCAGATACTACTGGATATGGAGAGAATGCATTTTGAACTCATAGATGGCACTCAGGATTATCAGTGGAGATCTGAAAAGGAGCAAAATTTTAGCTTAAAGTCCCATGTAAAAGCATCTTTTTGCAATTTTGCATTACAGAAAACATTTAATATGGATGATGCACGAGTATTTGATATGGATGTATCCAATCAAATTTTACTAATTGCACGAAAGCCAAGGGTGATAGGTGGAGCAGACTTTCTAACTAAAATGAGCTTGATACCTCCATTCGATATGGAAGATATCTTATTGCCTTCTACTACAGAGGGTATTAGAGACCTACATATTTCTCCTTCTGATAGAAGCCTAGCCCTCTATGCTTCAACAGGGAAGAAGTTATCAGTGCTCAGGTATGACTGCATTACTAATTGGTTGTCTGACGTGGTTCCTCCTTGGTCATGTTCTTGGGATCTCAACAATTCACATTACATGTATACTGGACTTCAGGTCAGCACTGTGGTTTTGTATTCATGGGATGTAGGAACTTCAAATGCTAATCTTTATATTTATCTATCTGTCCTGCAGAATGGTTCTGTCTTGGTGTTTGATATACGACAAACTGCAGGACCCATGAAGTCTTTAGTTGGATTGACTAGCAACCCTGTTCATACTGTTCATTCTCTTCTGCAAACTTCATGTCTTCCTAACTCCATCTTATCTGCATCTGCCATTGGCCTTTGTCAGTGGAACATTGATTCTGAAGAAGGGCCATTCATGCTTCCTGAATCTGATAACCAAGGAAGACAGCGCACTGATTATTTCAAAAAGATGGGTTCCTCGAATGCCAATCCAACTGTAGATGAAGCAACATTTGAATTGATCTTGCACGAGCTGCCTTCTTTTAGCGTCAACCAACGATTCAAACTGCCTGCTCAGGCTCGTGATATTAGGTACTCTCGGAGCTGTGGAATTCTTGGCTGTTTGAGTGAGACGACATTGCAACTTTTCTACACCAAAGTCTTGTGA 1758 0.434 MDNPFDHHVPPPHATVTAADYGVSDDDEDEEEEEEEEEEEEEEEEEEEEDDNEEDEDSSPRAFPVAPSTTSNPQPIVITVESQSHSSFGDDEVSNKRRKTEGREASSSSLAIDGSQGSEWNRTDIDGLFCPICMEAWTNSGDHQICCLPCGHIYGMSCIKRWLQQRRSTGKCPQCNIKCSLKDVRKLYASRVVTVDDESQKKITQLSICSKGADWRVKEAIWRKREAAYRLEIQKLKAFLVLILLRNTNLEQILLDMERMHFELIDGTQDYQWRSEKEQNFSLKSHVKASFCNFALQKTFNMDDARVFDMDVSNQILLIARKPRVIGGADFLTKMSLIPPFDMEDILLPSTTEGIRDLHISPSDRSLALYASTGKKLSVLRYDCITNWLSDVVPPWSCSWDLNNSHYMYTGLQVSTVVLYSWDVGTSNANLYIYLSVLQNGSVLVFDIRQTAGPMKSLVGLTSNPVHTVHSLLQTSCLPNSILSASAIGLCQWNIDSEEGPFMLPESDNQGRQRTDYFKKMGSSNANPTVDEATFELILHELPSFSVNQRFKLPAQARDIRYSRSCGILGCLSETTLQLFYTKVL 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01539 585 ProSiteProfiles Zinc finger RING-type profile. 130 176 IPR001841 -
Adu06g01539 585 PANTHER RFWD3 PROTEIN 26 418 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Adu06g01539 585 MobiDBLite consensus disorder prediction 1 116 - -
Adu06g01539 585 PANTHER RFWD3 PROTEIN 529 580 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Adu06g01539 585 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 529 580 - -
Adu06g01539 585 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 26 418 - -
Adu06g01539 585 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 421 511 - -
Adu06g01539 585 MobiDBLite consensus disorder prediction 63 89 - -
Adu06g01539 585 MobiDBLite consensus disorder prediction 22 57 - -
Adu06g01539 585 PANTHER RFWD3 PROTEIN 421 511 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Adu06g01539 585 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 231 IPR013083 -
Adu06g01539 585 SUPERFAMILY RING/U-box 121 182 - -
Adu06g01539 585 Coils Coil 23 58 - -
Adu06g01539 585 Pfam Ring finger domain 130 176 IPR001841 -
Adu06g01539 585 MobiDBLite consensus disorder prediction 90 104 - -
Adu06g01539 585 CDD mRING-C3HGC3_RFWD3 126 176 - -
Adu06g01539 585 SUPERFAMILY WD40 repeat-like 295 469 IPR036322 GO:0005515
Adu06g01539 585 SMART ring_2 130 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01539 Adu-Chr6 37399233 37403578 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01539 49 188 C3H Transcription Factor Family AT5G48655 29.412 1.47e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01539 K15691 - gmx:100818898 484.952