Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01496 ATGAGTCATGGTGCCCCTCAGTACCACAAGGACAAGGTGGTTCGTGATCTGTCTTCTGAAACTAATAATACTTTGGAGAACGGACCTGTTATGCACAACATGATTGCTACAAAAGCTGACGTAGGGCATTCCACTTCAAGGTGTGGCGGCTCTGAACAATGTAAAGATAATACACAAACTGGTGTTCATGTAAAAGATAAAAAAGCTGTTGGAGAACTTGTATGTTTGCAGTGCTTGCATGGTAGTGAACTCATTTGCTGCTTTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTTTGAATCCTCCTCTCAATTACTACCCTGTGGGCTTTTGGAATTGTGCATGGTGTGTTAAGAAAAAGCTAGATCTTGGTGCGTACTCCATTTCTGAAGGGGTGGAGTCCATCTTGGATTCTAGAGAAGGCATTTCGAAAAACAATGTGACGGAAAAGGAGTACTTTGTCAAGTATCTGGGCCTTGCTCATGCTCACAACCGCTGGATTCCAGAAACACAAATGCTTGAAGAGGGGCCAAAAGTTTTGTCAGCATTTAAGAGGAAGCGCCGGGTTATCAAGTGGAAAAAAGAATGGAGTATACCCCACCGCTTGTTGCTAAAAAGAGCAATTGTGTTACCAAAGCAAAATAAAGAACATTTAGATGGGCATGATAACAATTATTCAGTTGGCTGTTTTGAATGGCTTGTAAAGTGGTCTGGTCTTGGATATGATCATGTTACATGGGAACTAGATAGTGCTTCCTTTTTGACGTCGTCTGAAGGCATGAAACTCAAAAATGATTATGAAAGTCGTCGTCTTCAAAAGGGGATGGATGGAGACATTAATGAGGAGAGAAAAGCTTCCTTTGCTGAATTACCTGTACCGCCTTCAGGTAATTCAGTGGCAGTTTCTAGTCAGCATTTGAGTTATGTGAACAAGCTTTGCATGTGTTGGCACAAAGGTCAGAGTGCTGTCATTGTAGATGATAAGATTGACCAGGAGCGGGTTATGAAGGTGATGTCATTTATATTGTCATTGCATTGTAAGGTGACAAGGCCTTTCCTCATTGTCTCAACTTCTGCTGCTCTTGCTGTGTGGGAAAGAGAGTTCTTACATTTGGCTCCATCTGCAAATCTTGTCATTTACAAGGGAAACAAAGATGTACGGAGAAGCATAAGGACCTTGGAGTTTTATAACGATGACAATGGCATCTTATTTCAAATATTATTATCATCGTCTGATATTATCGTTGAGGACTTAAAGGAACTACAATGCATTTTGTGGGAAGCAATAATAGTTGATGAATGCCAGCGACCTAGAATTTTGGAACACCTTGACAATATCAAGATTTTGACAACAAAGTTGAGGCTCCTGGTTGTTAGCGGACAGATCAAGGATGATCGAGCTGATTATGTCAAAATGCTTTCCTTCCTCAACTCTGAAAATCATGTGTTAAATACTACTGAAACAGAGCCATTAGTCTCTGATAGCATTTCCGATTTGAAAAGCAAATTGGATCAATATGTGGCATTTAGAACAAAAACAGGGTCCACTAGGTTTGCAGAGTTTTGGGTTCCTTCCAAGCTTTCCAGTTTGCAACTTGAGCAGTATTGTTCATTGCTGCTTTCTGACAGAACTCTGCTATGCTCAGCCCAAAAGTCTGACAAGGTCAATGCTCTCCGCGGCCTCCTTAACTCAACAAGGAAGCTTCTTGAAAAAATCCTTTTGAAAGCAAGAAGCCGTGGTTTAAGAGTGATGATATTATTTCAGTCAACTAGTGATTTGACATCGATTGGAGATATTTTGGATGATGTACTTTGTCGGAGATTTGGCGAACATTGTTATGTACGATATGCTGCTGGGTATGCGCCCAAAGCGAAGCAAAGTGCTCTAGACAAATTTAATGATGGCGAAAGAGCATTTGTCTTCTTGTTGGAAAGTCGTGCTTGCCTCCCTAGTGTTAAGCTTTCCTCTGTTGATGCCATTATATTGTTTGACAGTGACTGGGACCCAGAAAATGATTTAAGAGTCTTACAACGTATGCCTATAAGCTCACAGTTCGAACAGTTAACGGTGTTTAGACTATACTCATCTTTTACTGTTGAAGAAAAGGTTCTAATGCTTGCAAAAGAGGGTAGTAGTATCCAGTTGGTTAACAATAGTACCTCTCATGCCCTGCTCAGATGGGGTGCCACCTATCTTTTCAGTAAGCTTGATGACTTACATGGCAGCAACACTCCAGTCTTTGCTCAAGACATTGCCTCTGATCAGTCACTTCTACATGATGTAATCTGTGAGTTATCAACCGTATTTTCTGGTGGAAGCAGTGACATTGATAATCATGGATTGTCCTTCATAGCGAGAGTATGGCAGAAAGGAGGGGAATATGCAAAGAACATTTTATTGCATGGCGAAAGAGTGATGAAGGAATTGGATGATGGTTTTGATTTTTTTTCTTGGAGTAATCTCCTTCAGGGAAGGAGTCCTAGATGGAAATTGTTGTCTGTTTCATCTCAAAGGATCAGAAAACCTGCCAATCACTTTGATCACAAAGCAAAGGAATCTGAAAGTGAAAATAATGCTGATAATAGAAAGAAGAGGAAAGTGTCTGAGGGTAACGTTGATTCCAAAAGGAAGGAAGTGTCCAAGGATACTACAGTCACAAGGAAGGGGAAAGTGCCAGATCATGCCAATTCCAAATATTTGAAAAAAAGTTTGAAGAACAAGAAGCTAAACACTAGTAATGTAGATGAGTTCTTGCCAAAGCCAGATTTAGCAGGTCTTTGTGATGTTCTACAACTTCCGAAAAATGTCAAGGCTCTTGGTGCAAGGCTTCTTGAGCACATATTGGAATATTTCAACGTTAATTGGCGAGACGTTTCTACCATGCAGGCATTTGAATTATCTGTGTGTTGGCTTGCGGCTTCGTTATTGAAGCACAATTTTGATAAGCAAGGTTCACTTGCACTTGCGAAAGTGCACTTGAACTTCAATTGCGAGGAAGAGGAAGTAACCTATGTTTACTCTAAACTGCTGAAATTTAAGAAGGAATTTTCAAGTTGTTTACAAAGTGGAATTTGTGTTGAGAAATGTACATCAGACTGCGAAACACCTGGGTTGACAGATTTGGTGGAGGATATGCAAAATGGTTTTCAGGGTCCTCTAGAATCCGACACATATAGACATGATCTTCAAAGGGAATCTCCCACAACTGTGCTAGCTACTCATTATCAGACTTGTGCAGAAAATTTTCAAATCAGACTTACAGATATTGGAAGTTGTCCTCAAAAGTCATCTGGCACTTTCCCTGCCAAAGCAGATGCTATCCCCGTGACATCCAAAGCTTCTTTCTTGGAGCATCAGAGTGAGGTCTTCGATTCAAGTGATGATCCTTGTAATGTCAACCCTGCCACTGGTTCTTTGGAAAATCAAATTAATGGCGATGATTTTGAAGTTTCTCTAATAAATAATAATGAAGTGGTTGAGACAATCACTTGCAGTACTGCTGATGTTCCTGAGGTCAACCAGCATTGCAGTGTAGTGAGTGCTGTCCATGGTGAGTCTATTATGGATTTTCCTGAGACTACTTTCCCATATATGGAACCATCAAATACAGATCTACTGCCACTGCCTCAGGAGGATGTTACATCTTTTTTGGAGAATATTTCAATTGGTGAAGTCTTGCCTTTTGATGAAATATTTTTTGAAAATTATAACCTTCATGAGGATGAACCAACATTACAAGTACCAGATGACCCACCTGAATCAGTCCCAGACCCATTGCAAATTGAAATGGAGAGAATAAAAAAGGCGACTGAAGAAGCTAACAGGATACGCCAGCAAAAATTACACCAGCTTGAGTCAGACCATGGTATGGAGGTTAAAGAATTGGTTGCAAAGTATCAAATGTTGCTTCAGAATATCAGTACTGAAGTAGCATTGCAAAAAAAGGAACTTGACGCATATTATAAAACAGTTCAAAAGAATAAGTTGTTGGCTTCTGTTTTGGATCACAATCACAAGGAATATAAAAGAGAAGCAGTTCTATTCGCAGAACAAGGCTTACCCTCTGCAATGGGAACACCTAGCTCCTCAAGTACTCAACAAAGAGAGCACCAACCCCCTCTTATGTCTGATCAAAGACTCGAACAGTGTCTACCGATGATTCCCCCACACTTGTTTACTCCAACGGAAGCGGTTAATACTCTGGAGATTGCTAACACTTCAACAGCCGTTCCAGAAATGAGCGCACCTAGAGAATGTATTGATCCCATGATTCAGTCCTATGTAAACTTGAATTACGGCTGTTATTCAATGGCCTCAAACCCCCATCTTGAAGCCTCTAATTCAGTGCCTATGATGCCAAGTCTAAGTAGTGGAATACCAGAACAGCAATTGCCACTACATTTACATCAATGGCAATATCAGTAA 4431 0.4053 MSHGAPQYHKDKVVRDLSSETNNTLENGPVMHNMIATKADVGHSTSRCGGSEQCKDNTQTGVHVKDKKAVGELVCLQCLHGSELICCFGKGCQRRYHPSCLNPPLNYYPVGFWNCAWCVKKKLDLGAYSISEGVESILDSREGISKNNVTEKEYFVKYLGLAHAHNRWIPETQMLEEGPKVLSAFKRKRRVIKWKKEWSIPHRLLLKRAIVLPKQNKEHLDGHDNNYSVGCFEWLVKWSGLGYDHVTWELDSASFLTSSEGMKLKNDYESRRLQKGMDGDINEERKASFAELPVPPSGNSVAVSSQHLSYVNKLCMCWHKGQSAVIVDDKIDQERVMKVMSFILSLHCKVTRPFLIVSTSAALAVWEREFLHLAPSANLVIYKGNKDVRRSIRTLEFYNDDNGILFQILLSSSDIIVEDLKELQCILWEAIIVDECQRPRILEHLDNIKILTTKLRLLVVSGQIKDDRADYVKMLSFLNSENHVLNTTETEPLVSDSISDLKSKLDQYVAFRTKTGSTRFAEFWVPSKLSSLQLEQYCSLLLSDRTLLCSAQKSDKVNALRGLLNSTRKLLEKILLKARSRGLRVMILFQSTSDLTSIGDILDDVLCRRFGEHCYVRYAAGYAPKAKQSALDKFNDGERAFVFLLESRACLPSVKLSSVDAIILFDSDWDPENDLRVLQRMPISSQFEQLTVFRLYSSFTVEEKVLMLAKEGSSIQLVNNSTSHALLRWGATYLFSKLDDLHGSNTPVFAQDIASDQSLLHDVICELSTVFSGGSSDIDNHGLSFIARVWQKGGEYAKNILLHGERVMKELDDGFDFFSWSNLLQGRSPRWKLLSVSSQRIRKPANHFDHKAKESESENNADNRKKRKVSEGNVDSKRKEVSKDTTVTRKGKVPDHANSKYLKKSLKNKKLNTSNVDEFLPKPDLAGLCDVLQLPKNVKALGARLLEHILEYFNVNWRDVSTMQAFELSVCWLAASLLKHNFDKQGSLALAKVHLNFNCEEEEVTYVYSKLLKFKKEFSSCLQSGICVEKCTSDCETPGLTDLVEDMQNGFQGPLESDTYRHDLQRESPTTVLATHYQTCAENFQIRLTDIGSCPQKSSGTFPAKADAIPVTSKASFLEHQSEVFDSSDDPCNVNPATGSLENQINGDDFEVSLINNNEVVETITCSTADVPEVNQHCSVVSAVHGESIMDFPETTFPYMEPSNTDLLPLPQEDVTSFLENISIGEVLPFDEIFFENYNLHEDEPTLQVPDDPPESVPDPLQIEMERIKKATEEANRIRQQKLHQLESDHGMEVKELVAKYQMLLQNISTEVALQKKELDAYYKTVQKNKLLASVLDHNHKEYKREAVLFAEQGLPSAMGTPSSSSTQQREHQPPLMSDQRLEQCLPMIPPHLFTPTEAVNTLEIANTSTAVPEMSAPRECIDPMIQSYVNLNYGCYSMASNPHLEASNSVPMMPSLSSGIPEQQLPLHLHQWQYQ 1476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01496 1476 Gene3D - 282 522 IPR038718 -
Adu06g01496 1476 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1247 1456 - -
Adu06g01496 1476 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1247 1456 - -
Adu06g01496 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 480 IPR027417 -
Adu06g01496 1476 Gene3D - 133 193 - -
Adu06g01496 1476 Pfam Chromo (CHRromatin Organisation MOdifier) domain 134 188 IPR023780 -
Adu06g01496 1476 ProSitePatterns Zinc finger PHD-type signature. 75 118 IPR019786 -
Adu06g01496 1476 Coils Coil 1261 1281 - -
Adu06g01496 1476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 428 712 IPR027417 -
Adu06g01496 1476 Pfam SNF2-related domain 337 481 IPR000330 GO:0005524|GO:0140658
Adu06g01496 1476 SUPERFAMILY Chromo domain-like 91 193 IPR016197 -
Adu06g01496 1476 MobiDBLite consensus disorder prediction 1356 1376 - -
Adu06g01496 1476 Gene3D - 1258 1338 - -
Adu06g01496 1476 ProSiteProfiles Zinc finger PHD-type profile. 72 121 IPR019787 -
Adu06g01496 1476 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 36 1021 - -
Adu06g01496 1476 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 36 1021 - -
Adu06g01496 1476 MobiDBLite consensus disorder prediction 1357 1375 - -
Adu06g01496 1476 SMART PHD_3 74 119 IPR001965 -
Adu06g01496 1476 CDD CD_CSD 134 187 - -
Adu06g01496 1476 Gene3D - 558 712 IPR027417 -
Adu06g01496 1476 ProSiteProfiles Chromo and chromo shadow domain profile. 204 249 IPR000953 -
Adu06g01496 1476 SMART chromo_7 197 270 IPR000953 -
Adu06g01496 1476 SMART chromo_7 131 190 IPR000953 -
Adu06g01496 1476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 125 IPR013083 -
Adu06g01496 1476 ProSiteProfiles Chromo and chromo shadow domain profile. 132 197 IPR000953 -
Adu06g01496 1476 MobiDBLite consensus disorder prediction 844 894 - -
Adu06g01496 1476 Gene3D - 210 262 - -
Adu06g01496 1476 SUPERFAMILY Chromo domain-like 230 254 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01496 Adu-Chr6 29845795 29864757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01496 528 711 RAD5 or RAD16-like Gene Family AT1G05120 25.543 1.75e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu06g01496 SNF2_N 9.3e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01496 - K11643 gmx:100813574 1160.98