Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01472 ATGGGCAACGCATCGAGTAGCGGCGGCACCACCCGTCGGCGACATGTTGTTTCTAGAAGGACTCATCCACCGCCTCCTCCTCCGGTGACGCCGCAGCCGGAGATCACCTCCAATCCCTTCCTGTATCCCGGAGGCAACCCGTACCCGGCTCAGTACCCGAACCAGAACCGTCCGATGCAATACCCGCAGTACCCTTACCCCGCTTACTACCCTCCGCCGCCGACGGTGCCCTTCCCCCACCACAACCAGCACCAGCACCAGCCTCAAATGGGGGTCGGGTGGGTTGGCGGCCGAGGTTACCCTTGCGGGACCATGGTGGCTCCTCCAGCACCTATCGTGGAGCACCAGAAGGCCGTGACAATCAGGAACGACGTAAATGTCAAGAAGGAAACATTGAAGAAGTTTTTGTCATCAAATGATGATCTACTGATTATGAATGTTTTTGTACTAAAATTCTTTGTTTTGCATGTTCTAACTATCCTGTTTCTTTATCTCTTTAACAGCATCACAATTTATTTCTTTGCAAAAGAAAATGAAAGCTGCATTCTAACACCAGTGAAAGAAAACCTTCTCGCACCCGTGACGGTTAATTTTCAGCAAGGTCTTGGCCAGAAGTTCAGGCAGCCTGCTGGAAGTGGTATTGATTTTAAAATGTTTAATGAGACAGAATTATTGCAAGTGGGTGAGATGGATGTCTACCCTCTAGTAGTAAAGGCAGATGCATCTCCTAGTAATACCAATGGATCAGATGAAACTACAACATCTAATACCAGAAACTCGCAGATAACACAAGCAGTGTTTGAGAAGGAGAAAGGTGAATTCCGGGTAAAAGTTGTCAAGCAGATTTTGTGGGCGAATGGAATGAGGTATGAGTTGCAGGAGATATACGGTATTGGAAGTTCAACAGAGACTGGTGCAGATGAGAGTGACCAGGGGAAAGAATGTGTCATCTGTTTGACAGAGCCTCGCGACACAATTGTCCATCCCTGCCGACATATGTGCATGTGTAATGGATGCGCAAAGGTTTTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGACCTGAGGAATGA 1110 0.4802 MGNASSSGGTTRRRHVVSRRTHPPPPPPVTPQPEITSNPFLYPGGNPYPAQYPNQNRPMQYPQYPYPAYYPPPPTVPFPHHNQHQHQPQMGVGWVGGRGYPCGTMVAPPAPIVEHQKAVTIRNDVNVKKETLKKFLSSNDDLLIMNVFVLKFFVLHVLTILFLYLFNSITIYFFAKENESCILTPVKENLLAPVTVNFQQGLGQKFRQPAGSGIDFKMFNETELLQVGEMDVYPLVVKADASPSNTNGSDETTTSNTRNSQITQAVFEKEKGEFRVKVVKQILWANGMRYELQEIYGIGSSTETGADESDQGKECVICLTEPRDTIVHPCRHMCMCNGCAKVLRFQTNRCPICRQPVERLLEIKVGPEE 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01472 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 364 IPR013083 -
Adu06g01472 369 ProSiteProfiles Zinc finger RING-type profile. 315 354 IPR001841 -
Adu06g01472 369 PANTHER MAHOGUNIN 1 368 IPR045194 GO:0061630
Adu06g01472 369 Pfam Zinc finger, C3HC4 type (RING finger) 313 359 - -
Adu06g01472 369 MobiDBLite consensus disorder prediction 1 48 - -
Adu06g01472 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 368 - -
Adu06g01472 369 SUPERFAMILY RING/U-box 314 359 - -
Adu06g01472 369 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 314 354 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01472 Adu-Chr6 26865286 26867483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01472 100 333 C3H Transcription Factor Family AT3G09770 52.500 1.96e-75 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01472 - - aprc:113862864 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01472 06 26865286 26867483 Adu06g01472 06 26865286 26867483 ECH
Adu06g01472 06 26865286 26867483 Adu02g02846 02 94113924 94116995 PCT