Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01458 ATGAACATTTCACATGTTGCTGATTCTATTGGTTTGAAAGAGATGCCAAGATATGAAGTTAAAATTATTGAGGAGGATGACTGGATGAAAGGAGCTCATGTAGCCAAGGATACACAATTGATAGATTCCATTGCTGAAAAACAATCCCAGATATTTTCAGAAAAATGTGCTCATCCTATGGTTCATGGAGGGATGGGGGTTGCCACTAGTGCATACCCAATGACTGAATCAGTTCTCTCGAGTTCAATGCGGCATGGTGGGATGCTTGGGCATTATAGTGGAAGTTCTACTACTTCAGCTGATAAACCTAAAATAGGCCTGATATGCTTGCGGTGTCGACGGCGTGGTCACCGAGCTAAGAATTGCCCTGAAGTTCAAGTTGGTGCCAATTATGACAAGTATTGTTACAATTGTGGAGAAACTGGTCATTCACCTGCAAATTGTCCCCACCATGTTCAAGAAGGAGGGACAAAGTTTGCAGAGTGCTTTGTCTGTAAACAGCAAGGACACTTGAGTAAAAACTGCCCTCAAAATGCTCATGGCATCTATCCTAAGGGTGGTTGTTGTAAAATATGTGGTGGCGTGACACATTTGGCAAGGGATTGCCCCGAAAAAGGCTTGTATATTAGGATTTCTTCAATGAGACTGAGAAATGAACAGAGGCCTTGTGGAACGGTAACCAAATTTGTGAGTGGGGATGACATTGAGGATGACTTCATGATAGATGACATAAATAACAGAGACAAGGACAAGTCCTCAAAGTCCAAAGACGGTCAAGCAAAACCAAAAAAGGGTCCTAAAGTTGTGAACTTCAGCTAA 819 0.4225 MNISHVADSIGLKEMPRYEVKIIEEDDWMKGAHVAKDTQLIDSIAEKQSQIFSEKCAHPMVHGGMGVATSAYPMTESVLSSSMRHGGMLGHYSGSSTTSADKPKIGLICLRCRRRGHRAKNCPEVQVGANYDKYCYNCGETGHSPANCPHHVQEGGTKFAECFVCKQQGHLSKNCPQNAHGIYPKGGCCKICGGVTHLARDCPEKGLYIRISSMRLRNEQRPCGTVTKFVSGDDIEDDFMIDDINNRDKDKSSKSKDGQAKPKKGPKVVNFS 272
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01458 272 MobiDBLite consensus disorder prediction 241 272 - -
Adu06g01458 272 SUPERFAMILY Retrovirus zinc finger-like domains 155 205 IPR036875 GO:0003676|GO:0008270
Adu06g01458 272 Pfam Zinc knuckle 162 177 IPR001878 GO:0003676|GO:0008270
Adu06g01458 272 Pfam Zinc knuckle 134 150 IPR001878 GO:0003676|GO:0008270
Adu06g01458 272 Gene3D - 155 206 - -
Adu06g01458 272 MobiDBLite consensus disorder prediction 242 263 - -
Adu06g01458 272 SUPERFAMILY Retrovirus zinc finger-like domains 105 151 IPR036875 GO:0003676|GO:0008270
Adu06g01458 272 Pfam Plant nuclear matrix protein 1 (NMP1) 24 57 IPR010604 GO:0051011
Adu06g01458 272 Gene3D - 89 154 - -
Adu06g01458 272 ProSiteProfiles Zinc finger CCHC-type profile. 162 177 IPR001878 GO:0003676|GO:0008270
Adu06g01458 272 ProSiteProfiles Zinc finger CCHC-type profile. 135 149 IPR001878 GO:0003676|GO:0008270
Adu06g01458 272 PANTHER OS04G0555800 PROTEIN 106 271 - -
Adu06g01458 272 SMART c2hcfinal6 161 177 IPR001878 GO:0003676|GO:0008270
Adu06g01458 272 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Adu06g01458 272 SMART c2hcfinal6 108 124 IPR001878 GO:0003676|GO:0008270
Adu06g01458 272 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
Adu06g01458 272 ProSiteProfiles Zinc finger CCHC-type profile. 109 124 IPR001878 GO:0003676|GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Adu06g01458 Adu-Chr6 25893025 25895668 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01458 107 205 C2H2 Transcription Factor Family AT5G20220 29.060 3.19e-07 49.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01458 - K05765 ahf:112805480 310.842