Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01450 ATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATTACCTTGGAGGTGGAGTCCTCCGATACCATCGACAATGTGAAGGCTAAGATCCAAGACAAGGAAGGCATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAAGACGGTCGCACCCTTGCCGACTATAATATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGCCTCCGTGGCGGCATGCAGATCTTCGTCAAAACCCTAACCGGAAAGACGATCACTCTGGAGGTTGAATCCTCCGACACAATCGACAACGTGAAGGCCAAGATTCAAGACAAAGAAGGCATTCCTCCCGATCAGCAGCGACTCATCTTCGCCGGGAAACAGCTAGAGGATGGTCGCACCCTCGCCGATTACAACATTCAAAAGGAGTCCACGCTCCACCTTGTTCTCCGTCTTCGCGGCGGCATGCAGATCTTTGTGAAAACCCTAACGGGAAAGACCATAACTCTCGAGGTTGAATCTTCGGACACAATAGACAACGTGAAGGCCAAGATTCAAGATAAAGAAGGAATCCCTCCTGATCAACAGCGACTCATCTTCGCTGGGAAGCAATTAGAGGACGGGAGGACGCTTGCTGATTACAACATACAGAAGGAGTCGACGTTGCATCTTGTTCTTAGGCAAAGATACAGGACAGAGGGGATTCCACCGGACCAGCAGCGTCTAATCTTTGCTGGGAAGCAGCTTGAGGACGGACGCACTCTGGCCGATTACAACATTCAAAAGGAGTCCACCCTCCATCTTGTTCTCAGGCTCCGTGGCGTGGTGCATTCGGCTCATTATCCTTCTTGTGTTGCTAGGAACTTGTTGCAAAGGATATTGTTTGATTTGTCTCTTGCGGTACAGTTAATCTGCCTCAGATCTCATTCCTTAGAAAAGATCACTTAA 939 0.5069 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRQRYRTEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGVVHSAHYPSCVARNLLQRILFDLSLAVQLICLRSHSLEKIT 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01450 312 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Adu06g01450 312 PANTHER UBIQUITIN 230 271 - -
Adu06g01450 312 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Adu06g01450 312 CDD Ubiquitin_like_fold 211 266 - -
Adu06g01450 312 CDD Ubl_ubiquitin 77 152 - -
Adu06g01450 312 SUPERFAMILY Ubiquitin-like 229 278 IPR029071 -
Adu06g01450 312 Gene3D - 1 76 - -
Adu06g01450 312 Gene3D - 77 152 - -
Adu06g01450 312 Gene3D - 153 227 - -
Adu06g01450 312 Gene3D - 228 272 - -
Adu06g01450 312 ProSiteProfiles Ubiquitin domain profile. 153 226 IPR000626 GO:0005515
Adu06g01450 312 PANTHER - 230 271 - -
Adu06g01450 312 PANTHER - 1 156 - -
Adu06g01450 312 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Adu06g01450 312 SUPERFAMILY Ubiquitin-like 151 226 IPR029071 -
Adu06g01450 312 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Adu06g01450 312 Pfam Ubiquitin family 229 270 IPR000626 GO:0005515
Adu06g01450 312 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Adu06g01450 312 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Adu06g01450 312 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Adu06g01450 312 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Adu06g01450 312 PANTHER UBIQUITIN 70 226 - -
Adu06g01450 312 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Adu06g01450 312 SMART ubq_7 225 268 IPR000626 GO:0005515
Adu06g01450 312 SMART ubq_7 1 72 IPR000626 GO:0005515
Adu06g01450 312 SMART ubq_7 77 148 IPR000626 GO:0005515
Adu06g01450 312 SMART ubq_7 153 224 IPR000626 GO:0005515
Adu06g01450 312 CDD Ubl_ubiquitin 153 226 - -
Adu06g01450 312 CDD Ubl_ubiquitin 1 76 - -
Adu06g01450 312 PRINTS Ubiquitin signature 32 52 IPR019956 -
Adu06g01450 312 PRINTS Ubiquitin signature 11 31 IPR019956 -
Adu06g01450 312 PRINTS Ubiquitin signature 53 74 IPR019956 -
Adu06g01450 312 PANTHER - 70 226 - -
Adu06g01450 312 PANTHER UBIQUITIN 1 156 - -
Adu06g01450 312 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Adu06g01450 312 ProSiteProfiles Ubiquitin domain profile. 230 272 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01450 Adu-Chr6 25098212 25099740 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01450 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 3.05e-48 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01450 K08770 - gmx:100819694 492.656