Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01399 ATGGCCAACGACTCGTTTTTGTTTTCCGGCATTCGTTTCGACAGAAAGAAGTTCGGAAACGACATTGCCAGGTTCGGGAAGAACAAACCCATTGATGACGATACCGCCCTCAAGATTACAGACCCTGTTGAACTCAAAACTGAGAAAACAATGGGGGAACAATTCCAACAGAGACCACCTTCTTCGAAGAAGCGGAAGCGCAAGGGAACCTCTTCCGATGCGGTTGAAGGATTCAGTGTATTTAGAAATTCTGCTTCTGCGGCGGATCCTGTGGATAAATCGAATGATGCAGTGAGAGCTGATGATGAGGCCATTCAGCTGAAGAAGGAACACAATAGGCAACTTGAGCGAGATGCTATATTCAGGAAGAAGAATAACATCCATGTGGCTGGGTATAACGTGCCATCCCCGCTTCAAAGTTTTGATGAATTGAAAACTAGATACAAATGTCCAAGATATTTATTGCGCAATATCACAGAACTTGGATTCAAAGAACCAACTCCAATCCAGAGGCAGGCTATTCCAGTACTTTTGCAGGATCGGGAATGCTTTGCTTGTGCTCCAACTGGCTCTGGAAAAACCTTCGCATTTGTGTGTCCTATGCTTATGAAACTCAAGGGGCCAGAAACAGGTGCCATTCGCGCTGTTATACTTTGTCATACGCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAGCTTGCCAAGGGAAAAAAATTTCGTATCAAGTTAATGACTAAACATCTTTCTAGAAATGCTGATTTTTCAAAATTTCCATGTGATATACTTATATCCACGCCACTTCGGTTACGCTTGACTATCCGGAGGAAGAAGGTTGATCTCAGCAGGTTTGAGTTTCTTGTATTGGATGAGTCCGATAAGCTGTTTGAGCCTGAACTGTTTAAGCAGATTGATTCTATTATTAAAGCATGTTCAAATCCCTCAATAATACGCTCACTATTCAGTGCCACTTTACCTGATTTTGTTGAGGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTATTGGCAGAAAGAATATGGCTTCTGAAACAATTAAGCAAAAGTTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCAGAGAGTCTTAATCCTCCAGTATTGCTCTTTGTGCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGACAATATTAGAGTGGATGTCATCCATTCTGATCTGTCTCAAGAACAGAGGGAAAATGCTGTTGATAACTTCAGAGCTGGCAAAACATGGGTTTTGATTGCCACTGATGTAGTTGCTCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCAGATTCTGCTGCCGCATATATCCACAGGATTGGTCGATCTGGCAGAGCAGGGAGGGCAGGAGAAGCAATTACTTTGTACACGGAGGAAGACATTCCATTCTTGCGGAACGTAGCTAATTTAATGGCAGCATCAGGTTGTGAGGTTCCATCATGGCTCATGGACTTACAAAAAAAGAAGTGGAGAAAGCACCGGCCAAAAAGAGATTCAATCTCAACCAAACCAGATATATAA 1611 0.4264 MANDSFLFSGIRFDRKKFGNDIARFGKNKPIDDDTALKITDPVELKTEKTMGEQFQQRPPSSKKRKRKGTSSDAVEGFSVFRNSASAADPVDKSNDAVRADDEAIQLKKEHNRQLERDAIFRKKNNIHVAGYNVPSPLQSFDELKTRYKCPRYLLRNITELGFKEPTPIQRQAIPVLLQDRECFACAPTGSGKTFAFVCPMLMKLKGPETGAIRAVILCHTRELSAQTYRECKKLAKGKKFRIKLMTKHLSRNADFSKFPCDILISTPLRLRLTIRRKKVDLSRFEFLVLDESDKLFEPELFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIIGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLLFVQSKERAKELYGELAFDNIRVDVIHSDLSQEQRENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRAGEAITLYTEEDIPFLRNVANLMAASGCEVPSWLMDLQKKKWRKHRPKRDSISTKPDI 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01399 536 Gene3D - 344 521 IPR027417 -
Adu06g01399 536 SMART ultradead3 162 359 IPR014001 -
Adu06g01399 536 Gene3D - 101 343 IPR027417 -
Adu06g01399 536 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 516 IPR001650 -
Adu06g01399 536 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Adu06g01399 536 CDD DEADc_DDX52 154 347 IPR044764 GO:0003724|GO:0005524|GO:0030490
Adu06g01399 536 Pfam Helicase conserved C-terminal domain 375 477 IPR001650 -
Adu06g01399 536 MobiDBLite consensus disorder prediction 42 73 - -
Adu06g01399 536 SMART helicmild6 396 477 IPR001650 -
Adu06g01399 536 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 533 - -
Adu06g01399 536 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 495 IPR027417 -
Adu06g01399 536 Pfam DEAD/DEAH box helicase 167 331 IPR011545 GO:0003676|GO:0005524
Adu06g01399 536 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 344 IPR014001 -
Adu06g01399 536 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 533 - -
Adu06g01399 536 CDD SF2_C_DEAD 356 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01399 Adu-Chr6 21370178 21373905 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01399 137 515 Eukaryotic Initiation Factors Gene Family AT3G19760 30.184 4.52e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01399 K14779 - gmx:100800969 853.973