Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01352 ATGAAGAGACAGAGAGAAAATGAAGGTTATTGTTCAGTAGAGAGCATTGATTTGGTGAAATGCCTAATGCTTCTTCCTCTTCTCCAAGAAAGAAGCAACAAGTCATCAACGTCATCAATGCATCATAGAAATGGGTCTGCGGAGTTTGAGTGCAAGACTTGCAACCGCAAGTTCTCTTCGTTTCAAGCACTGGGTGGGCACAGGGCTAGCCACAAGAGGCAGAAGCTAGAAGATGGCGAAGAAGAACTGAAGCAACAAGCCAAATCACTGAGCCTCTGGAACAACCCCAAGATGCACGAGTGCTCTATTTGTGGCCTTAAATTCTCTTTAGGCCAAGCACTCGGTGGTCACATGAGAAAACACAGAGGATTAGCGGAATCATCATCTTCATCATTCATCAACCATGTTATTGAGAAAACCCCCGTTCTTATGAGATCTAACAGCAAGAGGATTACGTGTCTCAACTTGGATTTGAACTTAACACCTTTCGACCCTCATGATGACTCCTTTGCCAACCCCACAACCATCCCACTTCCTCTTTCTTTCTTCTGA 552 0.4457 MKRQRENEGYCSVESIDLVKCLMLLPLLQERSNKSSTSSMHHRNGSAEFECKTCNRKFSSFQALGGHRASHKRQKLEDGEEELKQQAKSLSLWNNPKMHECSICGLKFSLGQALGGHMRKHRGLAESSSSSFINHVIEKTPVLMRSNSKRITCLNLDLNLTPFDPHDDSFANPTTIPLPLSFF 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01352 183 Pfam C2H2-type zinc finger 99 122 - -
Adu06g01352 183 Pfam C2H2-type zinc finger 49 74 - -
Adu06g01352 183 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 160 - -
Adu06g01352 183 SUPERFAMILY beta-beta-alpha zinc fingers 49 121 IPR036236 -
Adu06g01352 183 Gene3D Classic Zinc Finger 46 121 - -
Adu06g01352 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Adu06g01352 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Adu06g01352 183 PANTHER ZINC FINGER PROTEIN ZAT5 1 160 - -
Adu06g01352 183 SMART c2h2final6 99 121 IPR013087 -
Adu06g01352 183 SMART c2h2final6 49 71 IPR013087 -
Adu06g01352 183 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Adu06g01352 183 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01352 Adu-Chr6 19337289 19337894 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01352 1 177 C2H2 Transcription Factor Family AT2G37430 43.646 1.61e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu06g01352 zf-C2H2_6 9.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01352 - - aip:107648719 365.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01352 06 19337289 19337894 Adu02g01185 02 28754305 28755021 PCT