Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01238 ATGATCAAAGCAAGGATGATGGGAACTGATCAGGAGAGAAAGCAATTGATGAGGAAGCAAGCACAAGCCAATTCAAGAAAGGGTTGTATGAGGGGAAAAGGAGGCCCTCAGAATGCAACATGCACCTACAAAGGTGTAAGGCAAAGGATTTGGGGCAAATGGGTTGCCGAGATTCGCGAACCACGACGTGGTTCGCGTATCTGGCTTGGGACGTTCAATACGTCCCATGAAGCCGCCTTGGCTTACGATGCTGCGGCGCGTAAGCTTTACGGCCATGATGCTAAGCTCAATCTCCCAGACCTTCAACCCTCTATCTCCACAACTCAGGATATTCAAAGAGACAACCTTCTTCAACAACAATCTCACATGATGATTAATCAGCACAACATTGGCACCTCTTTCAACAACAACAACAACAATAACCTCAAACCTTTGGTGCCCATGGCTGAGGTTGGTGTTACACCAATTTACACCAATGAAGGCATTATGTCTCTTCCCTTAAGAGATGATATCAACACCTACACCACCATCAACAACATCAATAACTTCAACACCAAACCTATAATTTTGGAAAGCTTCCGAAACCCAACAAAGCCTATGGACAATAATATTATCAATAATAATAATGTAGAGAAGCCAAGTTCCTCATTTTCTGAGCCAGATTTTTATGATGATTCCATTTGGACAGAAGCTGCTGCATCTTTGAACTTTCCTATGCTTTCAGATGCTAATAATGGTTTTTATGAAGCTGGGGATATGGCTTGGATATGCAAGGTTGATGGTGAATAA 789 0.4284 MIKARMMGTDQERKQLMRKQAQANSRKGCMRGKGGPQNATCTYKGVRQRIWGKWVAEIREPRRGSRIWLGTFNTSHEAALAYDAAARKLYGHDAKLNLPDLQPSISTTQDIQRDNLLQQQSHMMINQHNIGTSFNNNNNNNLKPLVPMAEVGVTPIYTNEGIMSLPLRDDINTYTTINNINNFNTKPIILESFRNPTKPMDNNIINNNNVEKPSSSFSEPDFYDDSIWTEAAASLNFPMLSDANNGFYEAGDMAWICKVDGE 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01238 262 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 18 244 - -
Adu06g01238 262 CDD AP2 41 101 IPR001471 GO:0003700|GO:0006355
Adu06g01238 262 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Adu06g01238 262 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Adu06g01238 262 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Adu06g01238 262 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Adu06g01238 262 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 18 244 - -
Adu06g01238 262 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Adu06g01238 262 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Adu06g01238 262 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01238 Adu-Chr6 16678198 16680415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01238 2 100 AP2-EREBP Transcription Factor Family AT1G75490 69.697 1.96e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu06g01238 AP2 4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01238 - - adu:107493032 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01238 06 16678198 16680415 Adu06g01238 06 16678198 16680415 ECH
Adu06g01238 06 16678198 16680415 Adu08g00108 08 1454009 1455344 PCT