Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01200 ATGGCATTGAACCACAACCACACTCACTTTGAAGAGTATCAACATCATCACACACCACAACCTTCATCAGATTCTTCTCTACTCATATTTGTTATTGTCCTGCCTCTCATACCGGCCACACTTTTCATACTCATTACCTACTTATCTTTTGTTACAAAATGCTGCTCAAATTGGCACCATGTTAACCCTCTAAGATGGATCTCCTTCCTGCGGATGCAGAATCCCAATAATCCGCATCCACAGGATGAAGATCCCTTCATAGGATTCTCTCCAAGGATGCTCAACCTTGGCTTAGATGAATCTTCCATCCAAGAAATCCCAACATTTCAGTTTACAAAAGATTTTCAAAGCATCTCTGCCTGTGTGGTTTGTCTGACAGAGTTTCAAGAAAGGGAAATGCTCAAAGTTCTTCCAAATTGCAACCATGCATTTCACTTCGATTGCATTCATATTTGGCTTCAAACCAATGCAAATTGCCCTCTCTGCAGAACAAGTATCTCCGGCAACATGCAGCTTCCAACTGACCGTATCATAGCCCCGAGTTCTTCCCCTCAGGACTCTCAGTTGCTCTCTAACATGGCAAGTGATGAAGATTTTGTGGTCATTGAAGTTGGAGCAGAACATGAAGGAATTACAACACTGCCACAGATGCAGCAACAAGTGATGAATAATGACTCAGGGGAAAGCATAGCACACAGTAGGAGTTACTCTAGCTTTGCAAGGAAGAAACCATGGAAGTGCCACCATGTTTCAATCATGGGAGATGAGTGCATTGATGTTGGAAAGAAAGATGATCAATTCTCTTCTCTTCAGCCTATTAGAAGATCCTTTTCAATGGATTCTGCAAATGATAGACAAGTTTACTTAGATGTTCAAGCCATTATTCAGCAAAATAGGCATAATCAGAATCATGCTAGTGCCAGTGAAGATTGTAATAGCAGAACCAGAAGATCATTCTTTCCGTTCCGTTATTGCCGTGGATCCAAAAGTGCAATCATTCCTCTGGAAAATGAGGTTTAA 1020 0.4137 MALNHNHTHFEEYQHHHTPQPSSDSSLLIFVIVLPLIPATLFILITYLSFVTKCCSNWHHVNPLRWISFLRMQNPNNPHPQDEDPFIGFSPRMLNLGLDESSIQEIPTFQFTKDFQSISACVVCLTEFQEREMLKVLPNCNHAFHFDCIHIWLQTNANCPLCRTSISGNMQLPTDRIIAPSSSPQDSQLLSNMASDEDFVVIEVGAEHEGITTLPQMQQQVMNNDSGESIAHSRSYSSFARKKPWKCHHVSIMGDECIDVGKKDDQFSSLQPIRRSFSMDSANDRQVYLDVQAIIQQNRHNQNHASASEDCNSRTRRSFFPFRYCRGSKSAIIPLENEV 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01200 339 SUPERFAMILY RING/U-box 120 169 - -
Adu06g01200 339 Pfam Ring finger domain 120 163 IPR001841 -
Adu06g01200 339 PANTHER RING-H2 FINGER PROTEIN ATL16 11 336 IPR044600 GO:0016567|GO:0016740
Adu06g01200 339 Coils Coil 335 339 - -
Adu06g01200 339 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Adu06g01200 339 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 11 336 - -
Adu06g01200 339 CDD RING-H2_PA-TM-RING 121 163 - -
Adu06g01200 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 168 IPR013083 -
Adu06g01200 339 SMART ring_2 121 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01200 Adu-Chr6 16002722 16003741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01200 22 300 C3H Transcription Factor Family AT1G04360 41.613 1.59e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01200 K19041 - gmx:100809883 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01200 06 16002722 16003741 Adu06g01200 06 16002722 16003741 ECH