Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01183 ATGGCTGATGTTGAAGCAGAAGTCGCGACGGCACAACCGAAGAAGAGGACGTTCAAGAAGTTCAGCTTCAGAGGCGTCGACCTCGATGCTCTCTTGGACATGTCCACCGATGAACTTGTCAAGCTCTTCACTGCACGCGCCCGCAGAAGATTTCAACGCGGTTTGACGCGCAAGCCTATGGCGCTAATCAAGAAACTCCGTAAGGCGAAAAGGGAGGCTCCAGCCGGTGAAAAGCCAGAGCCAGTCAGGACTCACCTTCGCAACATGATCATTGTGCCTGAAATGATTGGTAGCATCATTGGTGTCTACAATGGTAAGACCTTCAATCAAGTTGAAATCAAACCAGAAATGATAGGCCACTATCTAGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGAAGGCCTGGTATTGGTGCAACTCACTCCTCGAGGAATTCAATTTTTCAATGTGCCCTTGTATTATTGTGTCACAATGTTAACAGCGGTGCCCAGCTCCTCCATCCAACCATCCAAGCAGTGCTCCATGCTCGTAGTCCGTGCCATTACTCTCTCCTTCAAGGCATTCCCTTCGAAAGTCCAGAAGTCGCCATTGAAGGTGACATTCTTGATCGTGGCTCAAGTGGTGTTCCCGACTCGGTAACGGGAACACCTGCAAGGACGATCACGCCAAGTGTTTCCGTCACAAAGAAGCGGCTGTTGTGGTGCAGGAATTCCGGAACCACACAACATCGTCCATGGAGTTTTCAACCCCGGTGGGCGGATCGAACAACACATTGA 783 0.4994 MADVEAEVATAQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRNSIFQCALVLLCHNVNSGAQLLHPTIQAVLHARSPCHYSLLQGIPFESPEVAIEGDILDRGSSGVPDSVTGTPARTITPSVSVTKKRLLWCRNSGTTQHRPWSFQPRWADRTTH 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01183 260 Pfam Ribosomal protein S19 49 134 IPR002222 GO:0003735|GO:0005840|GO:0006412
Adu06g01183 260 PANTHER LOW QUALITY PROTEIN: 40S RIBOSOMAL PROTEIN S15 2 146 - -
Adu06g01183 260 ProSitePatterns Ribosomal protein S19 signature. 104 128 IPR020934 GO:0003723
Adu06g01183 260 Hamap 30S ribosomal protein S19 [rpsS]. 47 140 IPR002222 GO:0003735|GO:0005840|GO:0006412
Adu06g01183 260 Gene3D 30s Ribosomal Protein S19; Chain A 8 149 IPR023575 GO:0003735|GO:0005840|GO:0006412
Adu06g01183 260 PRINTS Ribosomal protein S19 family signature 104 116 IPR002222 GO:0003735|GO:0005840|GO:0006412
Adu06g01183 260 PRINTS Ribosomal protein S19 family signature 84 103 IPR002222 GO:0003735|GO:0005840|GO:0006412
Adu06g01183 260 PRINTS Ribosomal protein S19 family signature 116 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Adu06g01183 260 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 146 IPR002222 GO:0003735|GO:0005840|GO:0006412
Adu06g01183 260 TIGRFAM uS19_arch: ribosomal protein uS19 18 146 IPR005713 GO:0003735|GO:0006412|GO:0015935
Adu06g01183 260 SUPERFAMILY Ribosomal protein S19 54 135 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01183 Adu-Chr6 15689458 15692387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01183 1 146 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.986 1.94e-87 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01183 K02958 - rcu:8280171 282.722