Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01164 TCTGGCATAAGTGACAGTGGCATTGGAATGATTTGCAATGTATTCGGTGAAACATTGACAAGATTACTTCTTGCTCTTTGCCCCTATGTGTCTTCAAGTGGTATTCAATTAGCTATGGCTCAGTTACCAAACCTTGAACTTATGGACTGTGGTATGACCATATGTGATCCTAATTCCGACGGTCCAACTGCAGACGACAATAGTTGTGAATTACAGCACAGATCTATTGCTAATGGTCACCTAACAAACCAAAGGCTAATCATCAAACATAGCCGTTTAAAGAAACTTAGTTTGTGGGGTTGTTTTGGTTTGGATGTCTGCAATGCTTATACAGCCATGGAAAATCTTTTACTTTGTAAGCGTTTACCTAATGGGTCCAAAAGGGTCCGGGTTCCTCATCATTTACTCAAACCATTGTTGCTAAGAACAGTCAGAGCTCGCCATCAGAACCGGTTTTTGCTACCCGTCACGCGCGATAACAAGTTTTCGCCGTTGCCTTTTGCTCCAACTGGCTATGGCAGTAGCAAGATTGCTCTCTTTAAGGTTTTATCTGCTGAGAAGGGGCAGGTTCATATAGTAGAGAAAAGTTACTTCTATTCCCTTGCAGTTGAGTTGAAGAGTTATATGATGAATTGGCTGCACGCCTTCTACCTTCAGCATCTGTGTCATCAAGCCCTAATTTTAAGTGCTGGAAAAAGCACTCTTGCACATGAAGTAGTCAGCCGGGTAAACAAGCTTTGGCCAGAGAGAGCTTCTTCCATGGACTCCCAGAATCCAGAGGAAGCACATGCCAGAAGGGGAGCTCCATGGACATTCAATCCATCACGTCTACTTGCGTGTTTTAAGAATCTTAAAATTCATGGATTCGTCTATGTTCCATCATTTGACCATGGGGTTGGGGACCCAGTGGAAGATGATATCTTTGTGAATATTCAAATGTCAAACCCTATAAAGTTGGTGTTACCTTATGGTGTTGAGAAGAAAGTGAATTGGACCAAAAGAGGAGAAAAGATTTGGTTGGAACAAGGTTGGAAAAAGGTTGTGGAATTGTGTGGTTTGAGTTATGAGTGGTTGTTGACTTTTGACTACAATGGAAGGTCTAGTTTTGAAGTCAAAGTATATAATACCACTGCTTTAAGGATAGCTTATTATGATGTTGTTGAGAATAACAAAGATATTGATGAAACTGAGAGCGATGATGATGATGATGATGATGATGAATCTCAGCATGAATTTGTTCAAGAACACTTCAAGAGAAAGAAGACTAACACAGTTAATGGGAGAAATGGGAATCCCAGTTTCAAGATTCGAATTCAAGAATCATATGTTGGGTCAAGTTGCGTGGCAATACCAGCAACGTTTGCAAGGAAGCATTTGGAGGAAGGACCGATTCGTATGAATGTGGGTAACAGAACTTGGACTGTGTGCTACAAAACTTGGAGAGGAAGTGACAGATATCGCAAACACAAATTGCAAAGTGGGTGGCTCAGATTTAGAAGAGAGAACAATTTAGAGGTTGGTGATGTGTGTGTCTTTGAGTTAATTAGCAAATTTCCTCAAACAATGACCATGAGATTGCAGAGTGGATGA 1590 0.4094 SGISDSGIGMICNVFGETLTRLLLALCPYVSSSGIQLAMAQLPNLELMDCGMTICDPNSDGPTADDNSCELQHRSIANGHLTNQRLIIKHSRLKKLSLWGCFGLDVCNAYTAMENLLLCKRLPNGSKRVRVPHHLLKPLLLRTVRARHQNRFLLPVTRDNKFSPLPFAPTGYGSSKIALFKVLSAEKGQVHIVEKSYFYSLAVELKSYMMNWLHAFYLQHLCHQALILSAGKSTLAHEVVSRVNKLWPERASSMDSQNPEEAHARRGAPWTFNPSRLLACFKNLKIHGFVYVPSFDHGVGDPVEDDIFVNIQMSNPIKLVLPYGVEKKVNWTKRGEKIWLEQGWKKVVELCGLSYEWLLTFDYNGRSSFEVKVYNTTALRIAYYDVVENNKDIDETESDDDDDDDDESQHEFVQEHFKRKKTNTVNGRNGNPSFKIRIQESYVGSSCVAIPATFARKHLEEGPIRMNVGNRTWTVCYKTWRGSDRYRKHKLQSGWLRFRRENNLEVGDVCVFELISKFPQTMTMRLQSG 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01164 529 SUPERFAMILY DNA-binding pseudobarrel domain 311 376 IPR015300 -
Adu06g01164 529 PANTHER B3 DOMAIN-CONTAINING 429 517 - -
Adu06g01164 529 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 312 422 - -
Adu06g01164 529 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 429 517 - -
Adu06g01164 529 SMART B3_2 434 528 IPR003340 GO:0003677
Adu06g01164 529 SMART B3_2 280 377 IPR003340 GO:0003677
Adu06g01164 529 ProSiteProfiles B3 DNA-binding domain profile. 433 529 IPR003340 GO:0003677
Adu06g01164 529 Gene3D - 249 288 IPR027417 -
Adu06g01164 529 Gene3D - 410 527 IPR015300 -
Adu06g01164 529 Pfam B3 DNA binding domain 435 520 IPR003340 GO:0003677
Adu06g01164 529 CDD B3_DNA 432 515 IPR003340 GO:0003677
Adu06g01164 529 Gene3D - 307 378 IPR015300 -
Adu06g01164 529 PANTHER B3 DOMAIN-CONTAINING 312 422 - -
Adu06g01164 529 SUPERFAMILY DNA-binding pseudobarrel domain 429 522 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01164 Adu-Chr6 15501666 15509542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01164 388 515 B3 DNA Binding Superfamily AT3G18990 33.333 3.53e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Adu06g01164 B3 2.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01164 - - adu:107493091 431.795