Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01130 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTGCCTTTGGTTCTGCTCTTCTTGTCAAGCACAAGCATGAAAAGAAAAAATATGTCCTCAAGAAGATTCGCCTTGCTCGCCAGACTGACAGAGCCCGAAGGTCTGCCCATCAGGAGATGGAGCTTATATCTAAAGTTCAAAATCCATTTATAGTGGAGCATAAAGATTCTTGGGTAGAAAGGGGTTGTTTTGTATGTATTGTCTTAAGTTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCTAATGGTGTTCATTTTCCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAACTGCTGATGGCCCTTGATTACTTGCATGTAAATCACATACTTCATCGAGATGTCAAGTGTTCAAATATTTTCTTGACAAAAGATCGAGACATCCGTCTAGGTGACTTTGGCCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTTGTTGGGACCCCAACTTATATGTGTCCTGAGCTTCTTGCTGACATACCCTATGGTTCTAAGTCAGACATCTGGTCTTTGGGATGCTGTGTTTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTTTTGATATACAAGCATTGATTAACAAAATAAACAAGTCTATAGTGGCTCCACTTCCAACTATATACTCTAGTGCTTTCCGAGGGCTTGTGAAAAGCATGCTACGGAAAAATCCAGAGCTTAGGCCAACGGCTGGTGAGTTATTGAATCATCCACATCTTCAGCCTTACATTCAAAAAATTCAGCTACAACTAAGTAGCCCCAGAAGTAGTAGTACTTTGGCATTTCAATGGCATGAGAAAAACCATGCAAGAAGTAGGTTCATAGAGCCAGAATCTGTTTCTTCTCTTTCTGGCCAAGACAAATGCTTGTCATTAAGCAGTGACAACAACAGGTCCTTGAATCCAAGTGTTTCTGGAACTGATGAACAAGGATCTCAGTGTTCTTCTACCCAAAGAGCAATTGGATCATCATCCACTTATTCAAAAGAGAAGCTCTATGAACTATCTATTGCCTGTGTCCCTGACAAATGCAATACTTATAAATCATCAAAAGCTAGAAAGTCCTCAATTGTTCAGAGACCTTCAACACTGAGAACTGCTAAGGCTTCTGCCACACTCAGAGGCCAGAAAATGACTCCATCTAGGACACACCCAATGCCTAATGCAGCAATCCGCAGAGCATCAATTCCACCACCAAGTAGAGCAAACATTGGCCTTCTCCAATGTGTGGAGTCTCCCAATGTCTCGGTTAACACTCCGAGAATCGACAAGATTGCAGAGTTCCCTCTGGCCTCATATGAGGATAATTTCTTCCCTGGCAAAGTAACATGCCCATCACCATCACCATCACCATCACCATCACCATCACCATCACCAACATCAATAATAACCACGAGCGAGGAAAAGTGCATGATCCAGGTTGTGGACAAAGCCACTGTCCACAACACCAACAGTGAACACTCTGCTGATCATAAGCATCGATTCGACACCTCGTCGTTGCAGCAACGTGCAGAGGCATTGGAGGGGCTGCTAGAGTTCAGTGCAAGGCTGCTACAACAACACAGGTTTGATGAACTTGGAGTCTTGTTGAAGCCATTTGGGCCTGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGGCCAAGAGCTTCAAACAAACTCTTCTTTAA 1725 0.4278 MEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTDRARRSAHQEMELISKVQNPFIVEHKDSWVERGCFVCIVLSYCEGGDMAEAIKKANGVHFPEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPTYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKAFDIQALINKINKSIVAPLPTIYSSAFRGLVKSMLRKNPELRPTAGELLNHPHLQPYIQKIQLQLSSPRSSSTLAFQWHEKNHARSRFIEPESVSSLSGQDKCLSLSSDNNRSLNPSVSGTDEQGSQCSSTQRAIGSSSTYSKEKLYELSIACVPDKCNTYKSSKARKSSIVQRPSTLRTAKASATLRGQKMTPSRTHPMPNAAIRRASIPPPSRANIGLLQCVESPNVSVNTPRIDKIAEFPLASYEDNFFPGKVTCPSPSPSPSPSPSPSPTSIITTSEEKCMIQVVDKATVHNTNSEHSADHKHRFDTSSLQQRAEALEGLLEFSARLLQQHRFDELGVLLKPFGPEKVSPRETAIWLAKSFKQTLL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01130 574 PANTHER SERINE/THREONINE-KINASE NEK4 477 563 - -
Adu06g01130 574 PANTHER SERINE/THREONINE-KINASE NEK4 1 500 - -
Adu06g01130 574 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Adu06g01130 574 MobiDBLite consensus disorder prediction 373 401 - -
Adu06g01130 574 CDD STKc_Nek 3 258 - -
Adu06g01130 574 MobiDBLite consensus disorder prediction 304 339 - -
Adu06g01130 574 Gene3D Transferase(Phosphotransferase) domain 1 86 325 - -
Adu06g01130 574 SUPERFAMILY Protein kinase-like (PK-like) 1 309 IPR011009 -
Adu06g01130 574 MobiDBLite consensus disorder prediction 373 404 - -
Adu06g01130 574 MobiDBLite consensus disorder prediction 462 476 - -
Adu06g01130 574 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu06g01130 574 MobiDBLite consensus disorder prediction 459 480 - -
Adu06g01130 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Adu06g01130 574 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Adu06g01130 574 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu06g01130 574 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu06g01130 574 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 500 - -
Adu06g01130 574 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 477 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01130 Adu-Chr6 14998533 15002486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01130 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 1.78e-36 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Adu06g01130 Pkinase 1.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01130 K08857 - gmx:100810347 756.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01130 06 14998533 15002486 Adu06g01130 06 14998533 15002486 ECH
Adu06g01130 06 14998533 15002486 Adu02g00693 02 9957839 9963528 PCT