Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01114 ATGCCGAAAGATTCATCAATCTCAAGTTCTGACGATGATTCGGTTATGTTCTTGGGGGATGTTACACCCCAAGCTAACCGTAACCGTAACCGTTACTGTCGTGTGCGTCGACGTGTGCTTGAAGGTGACAACGGAATACCTGCCAACCCTAACCCTAACGATAATCGTAGCCTAATCGTTGGAGGTCATGATTTGCGTGCCAGGAGGACCGTGACGGGTAATAACCAACCCAACCGTGACGGCAACGCTTCTGAAGAGAGTACTACAGCGGCTAAGAAGGCAGCAAGTCAAGCAAGAAAGAGTGGTGATGCAAACTTTCATGTCGGTGAGAGCAGCAAAATCCAAAAGAGGAAGACGAAGAAGAGGGGGAGGAAGAAGAAGAAGAAGGAGAACGACGATGTTTTGGATGAAATGACAAATAAGTTACTACGCGCCGGTTGGGAAATTGAGATTGATGAAAAAGATGAAGAAACTGTTTTCTATGATCTGAAGGGGAGAGCTTATACCAATTGCATCATAGCTGCATACGAGTGTTTGAAAAAGAAGTATGAAGAGCGCAAAGGAAGAGGGATCTATTATTTGAAGAATTACAAGTTTACTCCCATCAAGGATGATGATTTCGAGAAGCTTCTGTCATGGAAAGATGCTAAGAAGAGGAAAAGAAAAGATGAAGCTCATGACCCAAACCCTAATAATAACAATCGTAATAAGAGGGGAAAGAATAGCAGGAAAGACGCGAACAAGAAGAAGCAGAAACAGAAGGTGGAAACGAGCAGGAAAGGAAAAGAGAAGGTTGTTTACGATGAATCTGATTCTGATTCTGATTCTGACAGGGATCCAAATGATGACACGTGTCTTCTCTGTGCAAATGCTCGAGAAGGCACTCTGGTTTGTTGCGACGGTTGCCCTTCTTCTTTCCATCTGAGCTGCTTGAAATTACCTGGGGTTCCACCTGGTGACTGGTACTGCAGTTATTGCAGATGCAAATTTTGTGGGTTGATGACTGGTGCAGCTGATGATCCTATGTCACGCACATGTTGCTTTTGCGAGCATAAATATCATAGGTTCTGTTCACCCATGACTGGTGGTATCGTGATTGATCTTTCAGATAATCCGTTACACTTTTGCAGTAACAAATGCGAACAGTTGTTTGGGAGAGTTCAAGGGCTTCTTGGGGTCAAACATGAAATTGGAGATGGGTTTTCTTGCACTTTTTTATCTGGATTTGAGAATAATCGTCCTACCCAACTTCCAGAATGCCATGACAAGCTGGTTAGGGCACTGAAAATAATGCAAGATGGATTCAAACCAGGAATTGACCATAGAACCGGGACAAATTTGATACAAAGTGTCTTGAAGGAAAAGAGTAGGTCAAAGTTCAATCGCATGAATCATACAATGTTCTTTACTGCAATTATGGAACGGGACGACGAGATTATATGTGTGGCATCTCTAAGGGTTCATGAAAACAAAGTAGCAGAGATGCCACTAATTACAACCCGTGGTATGTATAGGCGACAAGGAATGTGTACCCGATTCATGACAGTCATCGAATCTGTTCTAAGCAGTTTAGGTGTTGACTTATTGGTCATACCATCAGTCAAAGAACGCGAGAAGACTTGGGTTTCAGTGTTTGGGTTTGAACCCTTTGATCTGGAAACCAAAACTAGAACTGAAAAAATGAAAATTTTTGTTTGCTCTGACTCGGTTATGCTGAAGAAAAACATTAAGAGTGTTGTCAGAGAAGTTCCTAATACTGAGAGGAACCAGTTCTAA 1776 0.4251 MPKDSSISSSDDDSVMFLGDVTPQANRNRNRYCRVRRRVLEGDNGIPANPNPNDNRSLIVGGHDLRARRTVTGNNQPNRDGNASEESTTAAKKAASQARKSGDANFHVGESSKIQKRKTKKRGRKKKKKENDDVLDEMTNKLLRAGWEIEIDEKDEETVFYDLKGRAYTNCIIAAYECLKKKYEERKGRGIYYLKNYKFTPIKDDDFEKLLSWKDAKKRKRKDEAHDPNPNNNNRNKRGKNSRKDANKKKQKQKVETSRKGKEKVVYDESDSDSDSDRDPNDDTCLLCANAREGTLVCCDGCPSSFHLSCLKLPGVPPGDWYCSYCRCKFCGLMTGAADDPMSRTCCFCEHKYHRFCSPMTGGIVIDLSDNPLHFCSNKCEQLFGRVQGLLGVKHEIGDGFSCTFLSGFENNRPTQLPECHDKLVRALKIMQDGFKPGIDHRTGTNLIQSVLKEKSRSKFNRMNHTMFFTAIMERDDEIICVASLRVHENKVAEMPLITTRGMYRRQGMCTRFMTVIESVLSSLGVDLLVIPSVKEREKTWVSVFGFEPFDLETKTRTEKMKIFVCSDSVMLKKNIKSVVREVPNTERNQF 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01114 591 MobiDBLite consensus disorder prediction 1 30 - -
Adu06g01114 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 379 IPR013083 -
Adu06g01114 591 SMART PHD_3 284 327 IPR001965 -
Adu06g01114 591 MobiDBLite consensus disorder prediction 69 133 - -
Adu06g01114 591 MobiDBLite consensus disorder prediction 218 281 - -
Adu06g01114 591 Gene3D - 439 573 - -
Adu06g01114 591 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 455 532 IPR016181 -
Adu06g01114 591 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 70 268 - -
Adu06g01114 591 ProSiteProfiles Zinc finger PHD-type profile. 282 329 IPR019787 -
Adu06g01114 591 Pfam PHD-finger 285 329 IPR019787 -
Adu06g01114 591 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 278 578 - -
Adu06g01114 591 SUPERFAMILY FYVE/PHD zinc finger 263 328 IPR011011 -
Adu06g01114 591 PANTHER PHD FINGER PROTEIN 12 278 578 IPR042163 GO:0003714|GO:0045892
Adu06g01114 591 MobiDBLite consensus disorder prediction 249 271 - -
Adu06g01114 591 ProSitePatterns Zinc finger PHD-type signature. 285 326 IPR019786 -
Adu06g01114 591 MobiDBLite consensus disorder prediction 218 233 - -
Adu06g01114 591 PANTHER PHD FINGER PROTEIN 12 70 268 IPR042163 GO:0003714|GO:0045892
Adu06g01114 591 MobiDBLite consensus disorder prediction 69 95 - -
Adu06g01114 591 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01114 Adu-Chr6 14786017 14793656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01114 279 576 PHD Transcription Factor Family AT4G14920 40.328 1.96e-69 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Adu06g01114 PHD 6.1e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01114 - - ahf:112696224 1038.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01114 06 14786017 14793656 Adu06g01114 06 14786017 14793656 ECH
Adu06g01114 06 14786017 14793656 Adu02g00659 02 9132896 9141127 PCT