Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01076 ATGGTTCACCTGGTCTGTGTCTCGCCTGTGCGTCTCTCGTCCTCATCGTCGCGCCCTCGTCCGGGAGTAGCTCACCGTCGCTGCTGCCTCGCCCTCGCTAGTCTCTGCTTCGCCTTGCTTGGACAGCTTGGTTTCTCTCTTCTCTGCCCGCGTTCTGCATCAGATTCAGCCGGTCAGTTCCCCATCACCAAGTTCACTCACAGCTCCAAGTTCAAATTCAAGTTTGCTTCAACTGCTGCACTTGCACACTTCAACGATTCACACAACGATTTCAGTGAAAGTGAGCATTCTTCTTCGTCATCATCTTCTTCTTATTGTAGCAGCAATAACATCACCAACGACAACATAAAAGAAGAAAGTTTTCACATTGTGAAAAGTTTGCAGAACAATCCTTCTCTTGCTTTTTCATTCTTCACTCAACTGAAGCAACAACAATTTGTGGGGTTCCCTGAGAACATTTCAACCTATGCAGCAATCATCAGGATTTTCTGCTACTGGGGCTTGAATAGAAGGTTGACTTTCGTGTTCCTTGATCTTATTGCACTGTCTAAACAGCACCCTTCATTTGAAATCCATGACTTGTTTGAGTTACTATTGGATGATGGTGGTGTTAATGGTGGGAATCACAATTACATGCTTAGAGCAATTGATGCGTATGTTAAAGCTTGTATTGTTCTTAAAATGTTTGACGAGGCCATTGATTTCTTGTCCCCAACTAGGAGGCACAGTGTTGTGCCGAATATCCTTACTTGTAACTTTCTTATAAATAGGTTGGTTGAGAATGGTAAGGTTGATATGGCGTTGGCAATTTATAATCAACTCAAGAGACTTGGTTTGTGTCCTAACCATTACACTTATGCTATTGTGATAAAGGCATTCTGTAAGAAGTGTGAACTGGAAAAGGCAGTTTATGTGTTCAAGGAGATGGAAGAAGCCAGGGTAAGGCCTGATTCGTATTGTTACACGGCTTATATTGAGGGGCTTTGCAACAATATGAGTGAGATGAAGTTGGTTGGAGCTGAGATTATGTTTTCAAATATGATAAAGAAGGGGATGGTTTGTCAGCATGTTTATTCAGCATTGACCTATGGCTACATCCTCCAGTGCTTGGTTGAGATGGGCCTTACTATGGATGTGGTTCAACTGTTCAAAGAATTTAAGAAATCAGGCATGTTTCTTGATGAGGTGGCCTACAACATTGTATTCAGCGCTTTGTGTAAGTTGGGGGAAGTGGACGATGCATTGGACATGGTGGAAGACATGAAAGCTAAGCGTATGGTTTTAGATATTAAGCACTATACAACCCTTATAAATGGATGCTTCCTTCGACGTCAACTTGTTGATGCCTTTGCTATGATCAGAGAAATGAAAGAGAAAGGTTTGAAGGCTGATATTGTCACATATAATGTTATTGCCGCTGGTTTGTCTAGAATTGGCTGGGCTCAGGATGCAGTTGACCTTTTGGACGAAATGGAGACTCAAGGTGTGAAGCCAAACTCCATTACACACAAGAGGATCATCGAAGGTTTATGTTCAGCGGGGAAGGTAGTGGAAGCCGAGACATTTTATCAGGCAGATGGCATCCAAGAAGCTATTATGCTTTTAGACACAGTGATGGCTCTTAACGTGGGACTTGGCAAAATAATGTATTATAAAGCAATAGCTGCTATGTGCCAAGATGGGAAATTGGAATATGCTCGTTCTTTGTTTCATTTATTCATCAAGAAAGGATTTACGCCTGATTTAATAACTTACACAATTATGATAAATACATATTGTAGGATTAACTACTTGCAAAAGGCCCATGAACTCTTTGAGGATATGAAGAGAAAAGGGATAAAACCTGATGTCGTTACGTATACAGTTATACTTGATGGGAACTTGAAAGCAAATTTAAGAAGGCATTTCTTGTCTCCAAGTGGAAAAAGAACATGGGACGTTACTTCCCTCTGGAGAGAGATGCAGCAAATGGAAATAACTCAAGATGTTGTTAGTTACACTGTTTTGATTGATGGTCAAATAAGGGCGGCTAACTTTCAAGATGCTATTAGCCTCTTCGATGAAATGGTTGACAGAGGAATACAACCAGATACTGTAACATATAGTGCTATGATTTCTGGGTTTTGTATCCGAGGGAACATGGAGAAAGATGATACCCTGCTTAAGGAAATGTCTTCCAAAGGAATGACACCAGACTCTGATCTCATCTCGGCTTTTAAACGTGGTATTATGAAAGCTAGAAAGGATAAATGGAAAACATTAGTGCACACTGCGAAAATTTCGCCTCAACAAAGGAGAGGAGAGCCAGTTCCCCAGGATCTGTTGAATAGGGTTTTGACTGCACATGCTTACTGGTGTCACCACCAAGCCAAGCAGCATGGGCATGGCAAGAACCGGGCTCTTACCATGAAGACTCCAGAAGCTTCTGCTGGAGAACTCAGTGTTGGTGCCGTCCTTgatctgctctgctctgttctagggcttctagcttctagAGACTGGTTTCACCGTACCATTCATTCCACCATTAGAATTGATGGTTCTGGCTTCATTCTTGTCCATGTTAATGATCTTGAGCTCCATAAAGAACTCTTTGCTTGCCAAAACAGCACTCTCAGCAATGGAGATGGTTATACCTTGATGAATGAGAATGGATCCATGATCAGTTGGCAATGCTGGGTGAAGAGCACCCAACTGGAGTTCTTGTTAGAAGGTTGGATTTTTGGCTTAAGCAACAATCTTGGACAGATAGCACAATCTTTAGACATGAGCTCAAGTACTTCAACACTTGTTACACTATACTCATCTTTCTCCTTTTTTGGCCGTTTGCTTTCAGCAGCACCAGACTATATTAGAAATAAGTTCTACTCTGCAAGGACTGGATGGCTAACCATTGCGCTTATGCCAACCCCAATTGCGTTCATCTTGCTTGCTTCACCAGAAAGTGCTGTAGCACTTCATGCAGGCACTGCAATAATTGGCTTAAGCTCTGGATTCATATTTGCAGCCGCGGTGTCAGTTACATCAGAACTCTTTGGACCTAACAGTGTGAGCGTTAATCACAACATCCTCGTAACAAACATCCCAATTGGGTCACTTCTCTATGGTTTTCTTGCTGCTCTGGTGTATGATTCTAATGCTTACTCAATACCAGGGAACTCATTGTCTGAAACATTGGTATGCATGGGAAGGAAATGCTATTTCTGGACATTTGTATCGTGGGGATGCTTATCTGTTGTGGGACTAGTTTCTAGTCTGCTCTTGTTCTTGAGAACCAAACATGCTTATGATCATTTTGAGAGACACCGAATTTCAACACAAACACCAATTGTTTCTTAA 3339 0.4142 MVHLVCVSPVRLSSSSSRPRPGVAHRRCCLALASLCFALLGQLGFSLLCPRSASDSAGQFPITKFTHSSKFKFKFASTAALAHFNDSHNDFSESEHSSSSSSSSYCSSNNITNDNIKEESFHIVKSLQNNPSLAFSFFTQLKQQQFVGFPENISTYAAIIRIFCYWGLNRRLTFVFLDLIALSKQHPSFEIHDLFELLLDDGGVNGGNHNYMLRAIDAYVKACIVLKMFDEAIDFLSPTRRHSVVPNILTCNFLINRLVENGKVDMALAIYNQLKRLGLCPNHYTYAIVIKAFCKKCELEKAVYVFKEMEEARVRPDSYCYTAYIEGLCNNMSEMKLVGAEIMFSNMIKKGMVCQHVYSALTYGYILQCLVEMGLTMDVVQLFKEFKKSGMFLDEVAYNIVFSALCKLGEVDDALDMVEDMKAKRMVLDIKHYTTLINGCFLRRQLVDAFAMIREMKEKGLKADIVTYNVIAAGLSRIGWAQDAVDLLDEMETQGVKPNSITHKRIIEGLCSAGKVVEAETFYQADGIQEAIMLLDTVMALNVGLGKIMYYKAIAAMCQDGKLEYARSLFHLFIKKGFTPDLITYTIMINTYCRINYLQKAHELFEDMKRKGIKPDVVTYTVILDGNLKANLRRHFLSPSGKRTWDVTSLWREMQQMEITQDVVSYTVLIDGQIRAANFQDAISLFDEMVDRGIQPDTVTYSAMISGFCIRGNMEKDDTLLKEMSSKGMTPDSDLISAFKRGIMKARKDKWKTLVHTAKISPQQRRGEPVPQDLLNRVLTAHAYWCHHQAKQHGHGKNRALTMKTPEASAGELSVGAVLDLLCSVLGLLASRDWFHRTIHSTIRIDGSGFILVHVNDLELHKELFACQNSTLSNGDGYTLMNENGSMISWQCWVKSTQLEFLLEGWIFGLSNNLGQIAQSLDMSSSTSTLVTLYSSFSFFGRLLSAAPDYIRNKFYSARTGWLTIALMPTPIAFILLASPESAVALHAGTAIIGLSSGFIFAAAVSVTSELFGPNSVSVNHNILVTNIPIGSLLYGFLAALVYDSNAYSIPGNSLSETLVCMGRKCYFWTFVSWGCLSVVGLVSSLLLFLRTKHAYDHFERHRISTQTPIVS 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01076 1112 Pfam PPR repeat family 464 512 IPR002885 -
Adu06g01076 1112 Pfam PPR repeat family 662 709 IPR002885 -
Adu06g01076 1112 Pfam PPR repeat family 246 295 IPR002885 -
Adu06g01076 1112 Pfam PPR repeat family 584 626 IPR002885 -
Adu06g01076 1112 Pfam PPR repeat family 394 440 IPR002885 -
Adu06g01076 1112 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 581 615 IPR002885 -
Adu06g01076 1112 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 540 750 - -
Adu06g01076 1112 SUPERFAMILY MFS general substrate transporter 901 1094 IPR036259 -
Adu06g01076 1112 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Adu06g01076 1112 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 662 696 IPR002885 -
Adu06g01076 1112 TIGRFAM PPR: pentatricopeptide repeat domain 466 499 IPR002885 -
Adu06g01076 1112 TIGRFAM PPR: pentatricopeptide repeat domain 549 581 IPR002885 -
Adu06g01076 1112 TIGRFAM PPR: pentatricopeptide repeat domain 699 733 IPR002885 -
Adu06g01076 1112 TIGRFAM PPR: pentatricopeptide repeat domain 433 464 IPR002885 -
Adu06g01076 1112 TIGRFAM PPR: pentatricopeptide repeat domain 284 318 IPR002885 -
Adu06g01076 1112 TIGRFAM PPR: pentatricopeptide repeat domain 664 698 IPR002885 -
Adu06g01076 1112 TIGRFAM PPR: pentatricopeptide repeat domain 396 429 IPR002885 -
Adu06g01076 1112 TIGRFAM PPR: pentatricopeptide repeat domain 250 282 IPR002885 -
Adu06g01076 1112 TIGRFAM PPR: pentatricopeptide repeat domain 583 617 IPR002885 -
Adu06g01076 1112 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Adu06g01076 1112 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Adu06g01076 1112 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 383 524 - -
Adu06g01076 1112 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 69 331 - -
Adu06g01076 1112 Gene3D Tetratricopeptide repeat domain 276 349 IPR011990 GO:0005515
Adu06g01076 1112 Gene3D Tetratricopeptide repeat domain 640 730 IPR011990 GO:0005515
Adu06g01076 1112 Gene3D Tetratricopeptide repeat domain 79 275 IPR011990 GO:0005515
Adu06g01076 1112 Gene3D Tetratricopeptide repeat domain 365 523 IPR011990 GO:0005515
Adu06g01076 1112 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 546 580 IPR002885 -
Adu06g01076 1112 Pfam PPR repeat 554 578 IPR002885 -
Adu06g01076 1112 Pfam PPR repeat 362 390 IPR002885 -
Adu06g01076 1112 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 540 750 - -
Adu06g01076 1112 Gene3D Tetratricopeptide repeat domain 524 639 IPR011990 GO:0005515
Adu06g01076 1112 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 383 524 - -
Adu06g01076 1112 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 69 331 - -
Adu06g01076 1112 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Adu06g01076 1112 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Adu06g01076 1112 Gene3D - 741 797 - -
Adu06g01076 1112 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 464 498 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01076 Adu-Chr6 14161987 14169228 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01076 815 1105 Nodulin-like Gene Family AT1G31470 50.161 5.37e-78 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01076 - - adu:107492957 914.064