Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00977 ATGATGAATCTGGCACCTGCTGCACCTCAAGCATCTAGAAACGTTGCAGCCCCACCACCACCTGTCCCTAATGGATCTGCACAGTCTTCTGTCAAAACCCGCATATGCAACAAGTTTAATTCTGCTGAAGGCTGTAAATTTGGTGATAAATGTCATTTTGCCCATGGTGAATGGGAACTTGGCAAGCCTATTGCTCATTTTGATGATCATCGTGCCATGGGTCCCCCTCCAGTAGGTCGCATGGCTGGTCCTGGTCGAATGGAGCCGCCCCCTGGTCCTGCCACTAGCTTTGGTGCCAATGCTACAGCCAAGATCAGTGTAGAAGCTTCCCTTGCTGGAGCTATCATTGGGAAGGGTGGTGTAAACTCGAAGCAGATATGTCGCCAAACAGGAGCCAAACTTTCGATTCGAGAGCACGAATCGGATCCAAATCTCAGAAACATAGAACTCGAGGGAAGTTTCGAACAAATTAAGGAGGCGAGCAACATGGTAAAGGAATTACTTTTGACCTTGCAGATGTCTGCGCCCCCTAAATCGAACCAAGGTGCCCCGGGGTCGGCTGCTCCTGGAAGCAACTACAAGACCAAGCTGTGTGAGAATTTTTCAAAAGGATCTTGCACTTTTGGGGACAGATGTCACTTTGCACACGGTGCTGCGGAGTTGCGTAAAGGTGTATGA 678 0.4941 MMNLAPAAPQASRNVAAPPPPVPNGSAQSSVKTRICNKFNSAEGCKFGDKCHFAHGEWELGKPIAHFDDHRAMGPPPVGRMAGPGRMEPPPGPATSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKELLLTLQMSAPPKSNQGAPGSAAPGSNYKTKLCENFSKGSCTFGDRCHFAHGAAELRKGV 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00977 225 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 90 172 IPR036612 GO:0003723
Adu06g00977 225 SUPERFAMILY CCCH zinc finger 191 222 IPR036855 GO:0046872
Adu06g00977 225 SUPERFAMILY CCCH zinc finger 30 61 IPR036855 GO:0046872
Adu06g00977 225 ProSiteProfiles Zinc finger C3H1-type profile. 192 219 IPR000571 GO:0046872
Adu06g00977 225 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 223 - -
Adu06g00977 225 Pfam KH domain 103 166 IPR004088 GO:0003723
Adu06g00977 225 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 57 IPR000571 GO:0046872
Adu06g00977 225 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 217 IPR000571 GO:0046872
Adu06g00977 225 Gene3D K Homology domain, type 1 96 191 IPR036612 GO:0003723
Adu06g00977 225 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 223 - -
Adu06g00977 225 SMART c3hfinal6 30 57 IPR000571 GO:0046872
Adu06g00977 225 SMART c3hfinal6 192 218 IPR000571 GO:0046872
Adu06g00977 225 ProSiteProfiles Zinc finger C3H1-type profile. 30 58 IPR000571 GO:0046872
Adu06g00977 225 ProSiteProfiles Type-1 KH domain profile. 100 164 - -
Adu06g00977 225 CDD KH-I 102 165 - -
Adu06g00977 225 MobiDBLite consensus disorder prediction 1 29 - -
Adu06g00977 225 Gene3D - 25 62 - -
Adu06g00977 225 Gene3D - 192 223 - -
Adu06g00977 225 SMART kh_6 99 169 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00977 Adu-Chr6 12203198 12206689 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu06g00977 KH_1 2.1e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00977 - - gmx:100803981 383.645