Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00935 ATGGAGCAAGCCACAGGAGTGCTGCGTGGATCCACTCACGACGACGTCGTATTAGAGTCAATTCAATTCAACGAAGAAATCCGGGGAATCATGGCGCCCGCGCCAGCGCCGGAAAACGCCAGCTCATTCACCGCGCTGCTCGAGCTACCGCCGACGCAGGCCGTTGAGCTCCTCCATTCTCCTGATTGCCCGGCCGCCGATCGGGAACCGCCGTGCCATGTTAGCACCAACCAAAAACCCTACCTTCTTTGCTCCTACGGCGGCAATTTGACCTTCCCTTCCAACGCCGCGCTGATAGAACGCGCCGCCAAGTTCTCAGTCTTCGCTGGCGAGAACTCGCCGCCGGAGGATGCGGCGCGCCTGGCTCCAGTAGCTGTATCCGGCGTGGTGAAGAATGAGCCGCAGGAAACCGACTCGAACCCCAGCTCCACGCAGGCCACTTCGGGTGAAAAGCTTCCATATGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACGGATAGCCATAGCTTAGCAGAAAGGGCAAGGAGAGAGAAGATAAACGCTCGGATGAAGCTTTTGCAGGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCCTTGGTTCTGGATGAAATTATCAACCACGTGCAATCTCTACAGCGTCAAGTGGAGTTCTTATCAATGAAATTAGCAGCCGTTAATCCAAGAATTGATTTCAGCCTGGATAGCTTGCTGGCTACTGATGGGTCATCTGTAATGGACAGCAACTTAACTAGCATGGCTTCACCTGTTATGTGGCCAGAAAACCTAGCCAATGGTAACAGACAGCATTTTCAACAACATTGGCAATTTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGCCAACCATAATTTCATGACTCCAGAACACTCACTTCTGAGTTATGACTCGTCTGCTAATTCAGCATCTCTGCAGTCAAATCAATTGAAGATGGAGCTCTGA 972 0.5257 MEQATGVLRGSTHDDVVLESIQFNEEIRGIMAPAPAPENASSFTALLELPPTQAVELLHSPDCPAADREPPCHVSTNQKPYLLCSYGGNLTFPSNAALIERAAKFSVFAGENSPPEDAARLAPVAVSGVVKNEPQETDSNPSSTQATSGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDFSLDSLLATDGSSVMDSNLTSMASPVMWPENLANGNRQHFQQHWQFDAFHQPLWGREEANHNFMTPEHSLLSYDSSANSASLQSNQLKMEL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00935 323 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 148 - -
Adu06g00935 323 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 148 IPR024097 GO:0006355
Adu06g00935 323 Coils Coil 203 223 - -
Adu06g00935 323 CDD bHLH_AtBPE_like 153 238 - -
Adu06g00935 323 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Adu06g00935 323 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 147 323 - -
Adu06g00935 323 MobiDBLite consensus disorder prediction 130 151 - -
Adu06g00935 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 232 IPR036638 GO:0046983
Adu06g00935 323 MobiDBLite consensus disorder prediction 132 150 - -
Adu06g00935 323 Gene3D - 160 232 IPR036638 GO:0046983
Adu06g00935 323 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 147 323 IPR024097 GO:0006355
Adu06g00935 323 SMART finulus 169 219 IPR011598 GO:0046983
Adu06g00935 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00935 Adu-Chr6 11601716 11606064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00935 10 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 47.721 7.10e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu06g00935 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00935 - - gmx:100814124 479.944