Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00929 ATGGCTCACAACAACTCTTCTTACTCCAATCTCTTCTTCTCCTCCTCCTCTTCTTCTTCTTCCTCTTCTTCCTTCTCCTCTCCTGCAACACCAGCACCACCGCCCTTTTTCCAATTCAACCACCACCGTTATTTCCCTTATTATTACCACCACCATCACACTACTACTGCTTCTGCACCTTTCTCTTATTCATCCTCATCTACTACTTCACCTCCTTCCCCTCCTCTCAGGGAAGAGCTTCCGCTTCTCACTCTCAGTCCCGCAAGGCCCGACACCAACCACCACCCTTCTTGCAGCACCACTTCCATGGATTTCGACGAAGAAGACGACGCCGACGCTGACGACGCTGATGCTGATGCTACTGATGCTGCTGATGCTACTACTGTCACGGTTGCACTGCACATAGGGCTTCCGAGCCCTAGCGCTGCGGAGATGGCATCCGTGCTCTCCGAGAAGGAGCACGGCGGAGGTGAGGATTCCGGAGGCGGTGGTTCGACGGGGAACAAGGTGAACAAGGGACAGTACTGGATCCCAACCCCATCTCAGATTCTGATTGGTCCTACCCAGTTTTCTTGCCCTGTTTGCTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCGCAATATAGAAAAGGACCAGAATCTCTAAGGGGAACTCAACCAACAGGGATGTTAAGGTTACCATGCTATTGTTGTGCACCAGGATGTAGGAACAACATTGACCACCCAAGATCAAAGCCATTGAAGGACTTTAGAACACTGCAAACACATTACAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGGAAATGTGGCAAGGCCTTTGCTGTTAGGGGTGATTGGAGAACCCATGAGAAGAACTGTGGCAAGCTTTGGTATTGTATTTGTGGTTCTGATTTCAAGCACAAGAGATCCCTTAAGGATCACATTAAAGCTTTTGGCTCTGGCCATGCAGCTTATGGCATTGATGGTTTTGAAGAAGATGATGATCCTGCTTCTGAAGTAGAGCAAGATCATGAATCCACCCAATAA 1056 0.4877 MAHNNSSYSNLFFSSSSSSSSSSSFSSPATPAPPPFFQFNHHRYFPYYYHHHHTTTASAPFSYSSSSTTSPPSPPLREELPLLTLSPARPDTNHHPSCSTTSMDFDEEDDADADDADADATDAADATTVTVALHIGLPSPSAAEMASVLSEKEHGGGEDSGGGGSTGNKVNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEDDDPASEVEQDHESTQ 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00929 351 Gene3D Classic Zinc Finger 189 212 - -
Adu06g00929 351 Coils Coil 340 351 - -
Adu06g00929 351 PANTHER ZINC FINGER PROTEIN WIP2 49 350 IPR043584 GO:0003700|GO:0010468
Adu06g00929 351 MobiDBLite consensus disorder prediction 103 121 - -
Adu06g00929 351 MobiDBLite consensus disorder prediction 59 121 - -
Adu06g00929 351 Gene3D Classic Zinc Finger 252 327 - -
Adu06g00929 351 MobiDBLite consensus disorder prediction 143 171 - -
Adu06g00929 351 SUPERFAMILY beta-beta-alpha zinc fingers 186 212 IPR036236 -
Adu06g00929 351 SUPERFAMILY beta-beta-alpha zinc fingers 255 294 IPR036236 -
Adu06g00929 351 MobiDBLite consensus disorder prediction 332 351 - -
Adu06g00929 351 SMART c2h2final6 274 294 IPR013087 -
Adu06g00929 351 SMART c2h2final6 190 212 IPR013087 -
Adu06g00929 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Adu06g00929 351 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 49 350 - -
Adu06g00929 351 MobiDBLite consensus disorder prediction 59 73 - -
Adu06g00929 351 MobiDBLite consensus disorder prediction 1 27 - -
Adu06g00929 351 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Adu06g00929 351 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 294 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00929 Adu-Chr6 11381720 11383479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00929 76 351 C2H2 Transcription Factor Family AT3G57670 68.750 1.83e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu06g00929 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00929 - - vvi:100255592 447.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00929 06 11381720 11383479 Adu06g00929 06 11381720 11383479 ECH
Adu06g00929 06 11381720 11383479 Adu08g01177 08 20758607 20760274 ECH
Adu06g00929 06 11381720 11383479 Adu02g01556 02 65075220 65079133 PCT