Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00725 ATGATTAAGAGGTGTGGTGAAGACGATGAATGGAGTTGGGATGGATCTTTGTCCGAGTCGGGTACTAGTTGGGTGTTTTGCTATCCTCCTCCACCGTCACACCACCACCAATTCCAGCGCGACACTCAGCAACTCTTCCAGCGCGACGCCCAGACCATCACCCCGGAGGCTCTCGAGAGCGTGAAGGCCGCCATAGCCAGCAGCGACGTCGACCACAAGACCGACGCGAAGCGGAAGGCAGTTCCCCGCCGTGCCGCTGGGCAGACGTGGGAGGATCCCTCGCTGGCCGAGTGGCCGGAGAACGACCATCGCTTGTTCTGCGGCGATCTAGGGAACGAGGTGAACGACGACGTTTTGTCGAAGACGTTCACAAGATTCCCTTCGTTTAACATGGCGAGAGTTGTGAGGGACAAGCGATCAGGGAAGACCAAAGGGTACGGATTCGTGAGCTTTGCGGACCCTTCGGACCTCGCTGTGGCTCTGAAGGAGATGAACGGGAAGTACGTTGGGAACAGGCCAATCAAGCTATGCAAGAGCAAGTGGAAGGAGAGGACCGATTATGATGCTGTTGATAAGCAGAAGAAGCACTCCAAGAAGAAGTTGAAGTCTTCCTCCAAGGTTGGCGTGTTGCATTACTAA 639 0.5556 MIKRCGEDDEWSWDGSLSESGTSWVFCYPPPPSHHHQFQRDTQQLFQRDAQTITPEALESVKAAIASSDVDHKTDAKRKAVPRRAAGQTWEDPSLAEWPENDHRLFCGDLGNEVNDDVLSKTFTRFPSFNMARVVRDKRSGKTKGYGFVSFADPSDLAVALKEMNGKYVGNRPIKLCKSKWKERTDYDAVDKQKKHSKKKLKSSSKVGVLHY 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00725 212 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 175 IPR000504 GO:0003723
Adu06g00725 212 Gene3D - 39 199 IPR012677 -
Adu06g00725 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 181 IPR000504 GO:0003723
Adu06g00725 212 SMART rrm1_1 104 177 IPR000504 GO:0003723
Adu06g00725 212 PANTHER RNA-BINDING PROTEIN 42-LIKE 37 211 - -
Adu06g00725 212 MobiDBLite consensus disorder prediction 69 94 - -
Adu06g00725 212 MobiDBLite consensus disorder prediction 192 212 - -
Adu06g00725 212 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 37 211 - -
Adu06g00725 212 SUPERFAMILY RNA-binding domain, RBD 86 183 IPR035979 GO:0003676
Adu06g00725 212 MobiDBLite consensus disorder prediction 69 85 - -
Adu06g00725 212 CDD RRM_RBM42 97 179 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00725 Adu-Chr6 8611629 8613600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00725 53 183 Eukaryotic Initiation Factors Gene Family AT1G71770 25.000 5.18e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00725 K25079 - adu:107484659 328.946