Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00646 ATGTGTGGCGGTGCCATAATCGCTGAGTTCATTCCCCGGAACCGTTCTCGCCGACTTACTGCCTCTGAAATCTGGCCCAACACATTCTCTAACAACCAAGTAGACGACTTTGACTTCGATTTTTCTCATCATCATCTCAAAAACACACCCACTCTCAGTAAAGCTTCTTCGCCTTCAGTTGGTGAGCAAGATCAGGAGAACAGCAAGCCCCCCGCGAAGAGGCAGAGGAAGAACCTCTACAGAGGGATCAGGCAGCGTCCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCAAGAAAAGGTGTTCGCGTTTGGCTCGGAACCTTCAACACCGCCGAAGAAGCCGCCAGGGCCTACGACAGAGAAGCTCGTAAGATTCGCGGAAAGAAAGCTAAAGTGAACTTCCCCAACGAGGATGACGAATACTCCATTCAACAATCTCGCAATGTTATTCCAAACGTTCCTCCTCCGATTCGACGATCGAGTAATCATCCTCCTCTGTATCAATATGGTGATGCCAACAACAACAACATGAACAACCAGGCAAGGACTCTGAACCTCAACTTGGAGTTTGGTTACGATCTGAACCATGGAGGAGCCGTTGGCGTTGGTGATGCCATCAACGCAGACCCATTTGTGAGTTGTGTTGATGAGAATTCTGAGTATGGGTCTGGTTCTGGCTCGGCATCGGGTGGGTCAAGTGGTGATCAACAACATCAAGAGGAGAAGAAGAGCTACGAGGTGGAGAAGCTTTCGGAGGAGCTAATGGCATATGAGAACTACATTGGGTTTTATGATCAAATGCCCTTCTATGATGCACAATCTGCTGCTGCCGCCGCCGCCAACAACAACAACAACGTTGTTCAGGAAAGTGTGGTTGGGGAACTTTGGACCTTCGATGAATGA 906 0.4945 MCGGAIIAEFIPRNRSRRLTASEIWPNTFSNNQVDDFDFDFSHHHLKNTPTLSKASSPSVGEQDQENSKPPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQQSRNVIPNVPPPIRRSSNHPPLYQYGDANNNNMNNQARTLNLNLEFGYDLNHGGAVGVGDAINADPFVSCVDENSEYGSGSGSASGGSSGDQQHQEEKKSYEVEKLSEELMAYENYIGFYDQMPFYDAQSAAAAAANNNNNVVQESVVGELWTFDE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00646 301 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
Adu06g00646 301 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Adu06g00646 301 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Adu06g00646 301 MobiDBLite consensus disorder prediction 49 81 - -
Adu06g00646 301 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Adu06g00646 301 MobiDBLite consensus disorder prediction 49 66 - -
Adu06g00646 301 PANTHER DNA-BINDING DOMAIN 1 270 IPR044808 GO:0003700|GO:0009873
Adu06g00646 301 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Adu06g00646 301 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Adu06g00646 301 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Adu06g00646 301 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Adu06g00646 301 MobiDBLite consensus disorder prediction 220 246 - -
Adu06g00646 301 PANTHER EREBP TRANSCRIPTION FACTOR 1 270 - -
Adu06g00646 301 MobiDBLite consensus disorder prediction 220 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00646 Adu-Chr6 7788555 7789669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00646 1 137 AP2-EREBP Transcription Factor Family AT3G16770 55.000 4.25e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu06g00646 AP2 8.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00646 K09286 - gmx:100819416 303.138