Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00612 ATGGTTTCTTCCCAAGCCACAACACGTAGAAGGAAGATTGAGATCAAGAGAGTTGAACAAAGCAACAAGCGCCACGTCACCTTCTCCAAGAGAAAGTTAGGGCTTTTCAACAAGGTCACAGAGCTCTCCATCCTCTGCCAGGCGGAAACCGCCTTAATCATCTCGTCGCAAAACGGAAAGCTTTACGCGTGCGGGTATCCCTCGCCGGATGCCGTGATCTGGCGTTTCCTCTATGGAGGAGATTCCTCGCCTCCGCAGAGGAACGACGTGCGATTCTTGAAGAAGAAGCAAAAGGAGAACGTGGAAGTTCAAAGGGCGCAGTACGAGTCTGCTCATGAAGCCCTCAAAGAAGAGAAGAAGCGACTCGACAAGACCAAGAAGGAAAGAAACAGCGACAACAATGGCGGTTGCTTAGGGTTTTCGCGGTGGTGGGAGAATCCAATTGATGATATGGATTTGGAGGAGCTCGTCAAGTTCAAAGAATCGTTGGAACAGTTGAAGACGAACCTGATTGCAGCCACTGACAATAAGATCAACATGTTCCAACAAATGATGATGCCGTCACCAGTTGCTGCTCCTTCTTCTTTAATCATGGCTCCAATGCAAACTAGGTTTTCCAATTTTAATTCAGTCTTGAATAATAATCAGGGTGGATTCAGCGCTGTTTATCAACCACAACAGCAAGCATATTGGGATTGGACCCGTAATAACGTCATCAATAATAATGGAATAATTGCTAGTAGTAGTAGTAACAATCTTAATCCTTTATTAGGAAGATGGGATTCTGGGAACAATGCTATTATGGTTGATGTTAATGGTAACGGGAGTAGTGGTTGTTCCTTTTTTTCTTAA 852 0.4484 MVSSQATTRRRKIEIKRVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETALIISSQNGKLYACGYPSPDAVIWRFLYGGDSSPPQRNDVRFLKKKQKENVEVQRAQYESAHEALKEEKKRLDKTKKERNSDNNGGCLGFSRWWENPIDDMDLEELVKFKESLEQLKTNLIAATDNKINMFQQMMMPSPVAAPSSLIMAPMQTRFSNFNSVLNNNQGGFSAVYQPQQQAYWDWTRNNVINNNGIIASSSSNNLNPLLGRWDSGNNAIMVDVNGNGSSGCSFFS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00612 283 Coils Coil 98 132 - -
Adu06g00612 283 Gene3D - 21 134 IPR036879 GO:0003677|GO:0046983
Adu06g00612 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 63 IPR002100 GO:0003677|GO:0046983
Adu06g00612 283 Coils Coil 156 176 - -
Adu06g00612 283 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Adu06g00612 283 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Adu06g00612 283 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Adu06g00612 283 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Adu06g00612 283 PANTHER MADS BOX PROTEIN 6 178 - -
Adu06g00612 283 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 6 178 - -
Adu06g00612 283 MobiDBLite consensus disorder prediction 108 133 - -
Adu06g00612 283 MobiDBLite consensus disorder prediction 108 131 - -
Adu06g00612 283 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Adu06g00612 283 SUPERFAMILY SRF-like 9 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00612 Adu-Chr6 7325614 7326465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00612 10 167 Type I MADS-box Gene Family AT5G60440 35.443 5.90e-25 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu06g00612 SRF-TF 4.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00612 - - aip:107627188 479.174