Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00579 ATGGAAGCTAATAAGAAGAATAAGGTAAAGAAATTAGGATCAGGCAGTATAGAAGAAGAAGAAGAGGAGAATGATAAAGGTATGATAAGAAAAGGTCCATGGAGCGTTGAAGAAGACGTGATTCTGAGCAATTACGTGGCCACTCACGGTCATGGTCGCTGGAACACCCTCGCCCGTTCTGCAGGACTTAAGAGGTCCGGGAAAAGTTGCAGGTTGAGATGGCTAAACTATCTTCGTCCTGATGTTCGCCGCGGAAACATCACACTCCACGAACAAATCACCATTCTTGATCTTCATTCACGCTGGGGAAATAGATGGTCGAAAATTGCGGAGCACTTGCCAGGAAGAACGGACAATGAGATAAAGAATTATTGGAGGACCAGAGTGAGTAAGCAGGCAAGGCAACTCAACTGTGACGTCAATAGCAAAATATTCAGGGACGCTTTGCGTTATGTTTGGATGCCTCTTTTGCAAGAGCGACTTCAATCGAACACGCAAATGGAGCATCCAAACGCAGCACAAACCTACTCCTCGGACTCATCATCATCAGCATCCCTTGGCATACAACAATTCTGTTCTGAATCTGATCAACAAGTGATGAGTAATCATGGTGTTTTGGTGCATAGTATTGTTGAAGATGAGCCCGGAATATGCCCGAGTATGAATAACGAAACGTTTGAATATACCAATATACCCTTGGGGGATAGTGGGGACTTAATGCTGGAGAGTTTGTGCAACAACGATGACAACATATATGGCTTCTGTCACGACTTTGTCATGACCTTGGAATAA 792 0.4419 MEANKKNKVKKLGSGSIEEEEEENDKGMIRKGPWSVEEDVILSNYVATHGHGRWNTLARSAGLKRSGKSCRLRWLNYLRPDVRRGNITLHEQITILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVSKQARQLNCDVNSKIFRDALRYVWMPLLQERLQSNTQMEHPNAAQTYSSDSSSSASLGIQQFCSESDQQVMSNHGVLVHSIVEDEPGICPSMNNETFEYTNIPLGDSGDLMLESLCNNDDNIYGFCHDFVMTLE 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00579 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 78 IPR017930 -
Adu06g00579 263 Pfam Myb-like DNA-binding domain 31 78 IPR001005 -
Adu06g00579 263 Pfam Myb-like DNA-binding domain 84 127 IPR001005 -
Adu06g00579 263 Gene3D - 31 83 - -
Adu06g00579 263 ProSiteProfiles Myb-like domain profile. 26 78 IPR001005 -
Adu06g00579 263 SMART sant 30 80 IPR001005 -
Adu06g00579 263 SMART sant 83 131 IPR001005 -
Adu06g00579 263 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Adu06g00579 263 CDD SANT 88 127 IPR001005 -
Adu06g00579 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Adu06g00579 263 PANTHER MYB TRANSCRIPTION FACTOR 15 214 - -
Adu06g00579 263 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 214 IPR044676 GO:0003700|GO:0006355|GO:0043565
Adu06g00579 263 SUPERFAMILY Homeodomain-like 30 125 IPR009057 -
Adu06g00579 263 CDD SANT 33 78 IPR001005 -
Adu06g00579 263 MobiDBLite consensus disorder prediction 1 29 - -
Adu06g00579 263 Gene3D - 88 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00579 Adu-Chr6 6942212 6943769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00579 10 200 MYB Transcription Factor Family AT2G47190 55.838 1.52e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu06g00579 Myb_DNA-binding 4.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00579 K09422 - gmx:100797220 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00579 06 6942212 6943769 Adu09g00991 09 17730069 17731473 PCT