Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00571 ATGGCATCAGCGGGTGTAGCACCTGCTTCTGGAGCAAAAGATATGAACGGAAGTTCAGTTGCTGTTGAAAGATTACCTGATGAGATGAATGACATGAAGATCAGGGATGACAGGGAAATGGAAACTGCTGTGGTAGATGGAAATGGCACTGAAACGGGACACATAATTGTCACTACCATTGGTGGTAAAAATGGTCAGCCCAAGCAGACAATAAGCTATATGGCTGAGCGTGTTGTTGGACATGGGTCTTTTGGTGTGGTTTTCCAGGCGAAGTGCTTGGAGACTGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAGGACAAGAGATACAAGAACCGGGAATTGCAAACAATGCGCCTTCTTGACCACCCTAATGTCGTCTCTTTGAAGCATTGCTTCTTCTCAACGACTGAGAAAGATGAGCTTTATCTTAACTTGGTACTGGAGTATGTTCCCGAGACTGTCAATAGGGTGATCAGACACTACAACAAAATGAATCAAAGGATGCCATTGATATATGTCAAACTATATTCTTATCAGATATTTAGAGCACTTGCTTATCTTCACAACAGCATTGGAGTATGTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAGCTGAAGATATGTGACTTTGGAAGTGCTAAAATTTTGGTAAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTACTACAGAGCTCCCGAGCTCATATTTGGGGCAACTGAATACACCACTGCCATTGACATCTGGTCAGGTGGTTGTGTACTTGGCGAACTATTACTTGGCCAGCCTCTCTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGGTTTTAGGTACGCCAACAAGGGAAGAAATCAAGTGTATGAATCCTAATTACACAGAATTTAAATTCCCTCAAATCAAAGCTCATCCATGGCACAAGATCTTTCACAAGCGGATGCCGCCTGAAGCTGTGGATCTTGTTGCAAGACTACTGCAGTACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCTCTTGTCCATCCATTCTTTGATGAACTGCGCGATCCGAATACCCGCTTACCAAATGGACGCTTTCTTCCTCCATTGTTTAACTTCAAACCAAGTGAGCTGAAGGGAGTGCCTGTGGAGATGCTGTTAATGGATTCCCTTACTTGCAAGAAACTGTTACTGTCATATTCCTTTTCAATGCTGTTGCCAAGTCCTGAATGCTCAACATTAGTAGTTGCTGGGAGGAATGGGAATAGGAAGACTGGCTTGCTGCATGAGCTCAACATAAATCATAGAACTTTTGATGTAACAAAATTTGGAGCCATTGGAGATGGAATAACAGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGTGAAAGTGAATCAGAATTTAATGTTATTATTGTTCCCAAAGGTTTCTCCTTCCTCATTCGGCCCACTATTTTCACTGGTCCTTGCCATGGTTACTTAGTATTGAAGGTGGATGGAACTATAATGCCACCAGATGGACCTGATTCTTGGCCAAAGAACAATACTAAGCGTCTATGGCTGGTGTTTTATAGAATCAATGGAATGTCACTTGAAGGAGGTGGTTTAATAGATGGAAGAGGAGATAAATGGTGGGAACTTCCTTGTAAGCCTCACAGGGGACCAAATGGAACAACTGCTCCTGGACCTTGTGATAGCCCAATGGCCATAAATTTTTTTATGGGTTCCAACTTGACTGTGCAAGAACTTAGGGTCAGGGACAGCCCCCAGATTCATTTAAGATTTGATGCATGCAGAAGTGTCCACATTGAATCTATCCACATAAAAGCTCCAAGACTAAGCCCCAACACTGATGGAATTCACATAGAAAACAGCACTGATGTCAAAATATATAATACTGTGATTTCTAATGGTGATGATTGTGTGTCCATTGGAACCGGTTGCTATGATGTTGATATAAAGAACATTACTTGTGGTCCTGGTCATGGAATCAGCATTGGTAGCTTGGGAAAGTACAACTCTAGAGCATGTGTTTCAAACATTAAGGTGAGAGACTCAGTTATTCAGATGACAGATAATGGAGTTAGGATCAAGACATGGCAAGGTGGATCAGGATATGTATCAGGAATAACATTCAGCAACATTCATATGTATAATGTTAGAAACCCCATGATAATAGACCAATTCTATTGCCTCAAAGAGGGTGAAGTGTGCAGAAACAAAACCTCTGCAGTGGTTGTATCAGACATTCTATACAGAAACATAAAGGGAACATATGATATAAGGAGCCCTCCTATGAGATTTGCATGCAGTGACAGTGTTCCATGCACCAACTTAACCCTCTCAGATATTGAGCTTCTTCCTGATCAAGGAGATATGGTTGTTGATCCTTTCTGTTGGAATGCTTATGGTGATCTCAGGACACAAACCATTCCACCAGTTTTTTGCTTGCTTGATGGATTTCCTCAGTCCATCTTGCACAATGACATAGCTCATTGCACGCGGTATTCATGA 2541 0.4203 MASAGVAPASGAKDMNGSSVAVERLPDEMNDMKIRDDREMETAVVDGNGTETGHIIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIRHYNKMNQRMPLIYVKLYSYQIFRALAYLHNSIGVCHRDIKPQNLLVNPHTHQLKICDFGSAKILVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSGGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVARLLQYSPNLRSTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKPSELKGVPVEMLLMDSLTCKKLLLSYSFSMLLPSPECSTLVVAGRNGNRKTGLLHELNINHRTFDVTKFGAIGDGITDDTESFKMAWDTACESESEFNVIIVPKGFSFLIRPTIFTGPCHGYLVLKVDGTIMPPDGPDSWPKNNTKRLWLVFYRINGMSLEGGGLIDGRGDKWWELPCKPHRGPNGTTAPGPCDSPMAINFFMGSNLTVQELRVRDSPQIHLRFDACRSVHIESIHIKAPRLSPNTDGIHIENSTDVKIYNTVISNGDDCVSIGTGCYDVDIKNITCGPGHGISIGSLGKYNSRACVSNIKVRDSVIQMTDNGVRIKTWQGGSGYVSGITFSNIHMYNVRNPMIIDQFYCLKEGEVCRNKTSAVVVSDILYRNIKGTYDIRSPPMRFACSDSVPCTNLTLSDIELLPDQGDMVVDPFCWNAYGDLRTQTIPPVFCLLDGFPQSILHNDIAHCTRYS 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00571 846 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 393 - -
Adu06g00571 846 CDD STKc_GSK3 68 360 IPR039192 -
Adu06g00571 846 Pfam Protein kinase domain 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu06g00571 846 MobiDBLite consensus disorder prediction 1 25 - -
Adu06g00571 846 Pfam Glycosyl hydrolases family 28 477 795 IPR000743 GO:0004650|GO:0005975
Adu06g00571 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Adu06g00571 846 SMART serkin_6 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu06g00571 846 ProSiteProfiles Protein kinase domain profile. 73 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu06g00571 846 Gene3D Phosphorylase Kinase; domain 1 57 152 - -
Adu06g00571 846 SMART pbh1 657 677 IPR006626 -
Adu06g00571 846 SMART pbh1 607 633 IPR006626 -
Adu06g00571 846 SMART pbh1 716 737 IPR006626 -
Adu06g00571 846 SMART pbh1 634 655 IPR006626 -
Adu06g00571 846 SMART pbh1 687 708 IPR006626 -
Adu06g00571 846 Gene3D Transferase(Phosphotransferase) domain 1 153 395 - -
Adu06g00571 846 SUPERFAMILY Protein kinase-like (PK-like) 72 383 IPR011009 -
Adu06g00571 846 ProSitePatterns Polygalacturonase active site. 664 677 IPR000743 GO:0004650|GO:0005975
Adu06g00571 846 ProSitePatterns Protein kinases ATP-binding region signature. 79 103 IPR017441 GO:0005524
Adu06g00571 846 Gene3D - 435 824 IPR012334 -
Adu06g00571 846 SUPERFAMILY Pectin lyase-like 440 829 IPR011050 -
Adu06g00571 846 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 1 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00571 Adu-Chr6 6787390 6795456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00571 440 842 Glycoside Hydrolase AT1G02460 65.517 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Adu06g00571 Glyco_hydro_28 1.3e-82 CL0268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00571 K00924 - nnu:104611240 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00571 06 6787390 6795456 Adu06g00571 06 6787390 6795456 ECH
Adu06g00571 06 6787390 6795456 Adu09g01004 09 18297759 18302024 ECH
Adu04g00795 04 11204854 11209131 Adu06g00571 06 6787390 6795456 ECH
Adu06g00571 06 6787390 6795456 Adu09g01004 09 18297759 18302024 PCT