Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00558 ATGGAAGCTAGATTTGGTACTGAAGCTCTTCAATTCTATGCTATGGGTGGGTCCTCAGTGGGGAAGAGGTCCATGGAGTGGGATTTGAATGATTGGAAATGGGATGGTGATCTATTCATAGCTAGGCCTTTGAATCCTGGGCCTGAACACAGGCAATTCTTCCCTGCTGGTACCAGGATCCCTGTGGCCGGGGGTCCTTCCAACTCTAATAGCTCATCCTCGTGTTCTGATGAGGTAGATCTCGGGATTCGTGGAGGGAACAAGGAAGGGGATAAGAAGAGGAGGGTTGTTGTGCTGGAGGATGATGCTTTGAATGAGGAATCTGGTACTCTTAGCTTAAAGCTCGGTGGTGGTGTTGGCGGGCATGGTGGTGCCCAAATTGGTAGCTGGGAAGGAGTGAACGGGAAGAAGAGCAGAGTAGCTGGAGGCAATTCGAATCGGGCTGTTTGCCAAGTGGAGGATTGTGGTGCAGATCTCAGCAGTGCTAAAGATTATCACAGGCGCCATAAAGTTTGTGAGATGCACTCCAAGGCCACTAAGGCACTTGTGGGAAATGCAATGCAACGATTCTGCCAACAATGTAGTAGGCAAGTTCAATTCTATTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCAGGCCACAATAAGCGGAGGAGGAAAACAAACAACGACGCTGTTCCTAATGCAACTTCACTAAATGATGATCAGACAAGTAGTTACCTGCTGATAAGTTTATTGAAGATACTTTCAAACATGCATTCTGACAGGTCAGATCAGACCACCGATCAGGATCTGCTGACTCACTTGCTTAGGAGTCTTGCTAGTCAAAATGGTGATCAAGGGGGTAAGAACTTGTCAAACCTTTTGGCTCAACCAGAGAATTTGTTGAAAGAAGGGAGCTCATCTGGGAAGTCTGAGATGGTTTCCACTTTATTCTCAAATGGATCTCAAGGCTCTCCATCTGTAATACAACAGCATCAAGCAATTTCTGTAGCTGAGCTCCAACATCAGGTGATGCATGCACATGATATTATGCCTACTGATCAACAAATCATGTCTTCTACAAAGCCCAGCGCTTCAAATAGTCCTCCAACTTACTCAGAAGCCCGAGACAGTACTGCTGGACAGACAAAGATAAACAATTTTGATTTGAATGACATATATATCGACTCAGATGATGGCATAGAAGATATTGAAAAGTTGCCTGTCTCTGCAAATCTCGGTACTAGCTCTCTTGAATACCCATGGACACAACATGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGCAACTCTGATTCTGCATCTGCTCAGTCCCCTAGTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAACTCTTTGGCAAAGAACCAAATGATTTCCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCAACTGACATGGAAAGCTATATCCGGCCTGGTTGTATTGTTCTGACCATTTATCTGCGCCAGTCTGAAGCTATGTGGGAGGAACTTTGCTATGATTTGACTTCCAGCTTGAGTAGGCTTCTGGATGTCTCAGATGTTGATTTTTGGAGGACTGGATGGGTTCATATCCGGGTGCAGCATCAGCTAGCATTTGTTTTCAATGGTCAGGTTGTCATAGATACATCCTTACCTTTCAGAAGCAACAATTACGGCAAGATTCTTAGTGTTAGTCCAATTGCTGTACCAGCATCAAAAACAGCTCATTTTTCTGTCAAGGGCATCAACCTGAATCGCCCGGCCACAAGGTTATTGTGTGCTTTAGAAGGAAATTATCTATCTTGTGAAGATGCTCATGAGTCGATGGATCAAGGCTCCAAGGAGCTTGAAGAGCTTCAATGTATCCAATTTTCATGTTCTGTCCCCGTGATAAATGGAAGAGGATTTATTGAGATTGAGGATCAGGGTCTAAGCAGCAGCTATTTTCCTTTCATTGTTGCTGAGGAGGACGTTTGCTCTGAAATCTGTGTGCTTGAGCCCTTAATAGAAGTAAGTGATATTGATCCCGATAATGAAGGGACTGGAAAAATTAAAGCCAAAAACCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAATTGAGATCACGGATGGTTCACTTGAACTCTAGTGTAGAACTCTTTCCACTAAAACGATTCAAGTGGCTCATGGAGTTCTCTGTGGACCGTGATTGGTGTGCTGTAGTGAAAAAACTACTGAACCTACTGCTTAGTGGAACAGTGGGCACAGGAGATCACCAATCACTTCATCTTGCACTTTCAGAGATGGGTCTCCTTCATAAAGCTGTCAGGAGAAATAGCAGGCAATTGGTGGAGCTACTTTTGAGATATGTTCCCGAGAATATTTCTGACAAACTAGGACATGAAGACATGGCTCTGGTTGGCGGAGAGAATCAGAGTTTCTTGTTTAGACCCGATGCTGCTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCAGAGGAAGTACTGGATGCGTTAACCAACGATCCTTGCATGGTGGGAATCGAAGCATGGAAGAGCGCTCGTGATAGCACAGGCTCGACCCCCGAGGATTATGCACGTTTACGAGGCCATTATGCTTACATTCACCTGGTGCAGAAGAAAATCAACAAGAGGCAAGGAGGGGCTCATGTTGTGGTTGACATTCCAAGCAATCTGACTGGGTTCAATACAAACCAGAAGCAAAATGAGACGACCAGCTTCGACATTGTTGGAAAGGCTGAAGGAAGAAGTGCCCAAAAGCAGTGCAAACTATGTGATAATAAGTTGTCTTGTAGAGCTGTAGTAGGCAAGTCTCTGGCATACAGACCTGCTATGCTGTCGATGGTGGCTATAGCAGCAGTCTGTGTCTGTGTCGCGCTTCTGTTTAAGAGCTCGCCGGAAGTTCTGTACGTGTTCCGCCCATTCAGGTGGGAATCGTTGGAGTACGGAACAAGCTGA 3021 0.4528 MEARFGTEALQFYAMGGSSVGKRSMEWDLNDWKWDGDLFIARPLNPGPEHRQFFPAGTRIPVAGGPSNSNSSSSCSDEVDLGIRGGNKEGDKKRRVVVLEDDALNEESGTLSLKLGGGVGGHGGAQIGSWEGVNGKKSRVAGGNSNRAVCQVEDCGADLSSAKDYHRRHKVCEMHSKATKALVGNAMQRFCQQCSRQVQFYFDEGKRSCRRRLAGHNKRRRKTNNDAVPNATSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHLLRSLASQNGDQGGKNLSNLLAQPENLLKEGSSSGKSEMVSTLFSNGSQGSPSVIQQHQAISVAELQHQVMHAHDIMPTDQQIMSSTKPSASNSPPTYSEARDSTAGQTKINNFDLNDIYIDSDDGIEDIEKLPVSANLGTSSLEYPWTQHDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQSEAMWEELCYDLTSSLSRLLDVSDVDFWRTGWVHIRVQHQLAFVFNGQVVIDTSLPFRSNNYGKILSVSPIAVPASKTAHFSVKGINLNRPATRLLCALEGNYLSCEDAHESMDQGSKELEELQCIQFSCSVPVINGRGFIEIEDQGLSSSYFPFIVAEEDVCSEICVLEPLIEVSDIDPDNEGTGKIKAKNQAMDFIHEMGWLLHRSQLRSRMVHLNSSVELFPLKRFKWLMEFSVDRDWCAVVKKLLNLLLSGTVGTGDHQSLHLALSEMGLLHKAVRRNSRQLVELLLRYVPENISDKLGHEDMALVGGENQSFLFRPDAAGPAGLTPLHIAAGKDGSEEVLDALTNDPCMVGIEAWKSARDSTGSTPEDYARLRGHYAYIHLVQKKINKRQGGAHVVVDIPSNLTGFNTNQKQNETTSFDIVGKAEGRSAQKQCKLCDNKLSCRAVVGKSLAYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWESLEYGTS 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00558 1006 Gene3D - 141 210 IPR036893 GO:0003677|GO:0005634
Adu06g00558 1006 MobiDBLite consensus disorder prediction 415 452 - -
Adu06g00558 1006 Pfam SBP domain 150 222 IPR004333 GO:0003677
Adu06g00558 1006 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 15 1005 - -
Adu06g00558 1006 ProSiteProfiles Zinc finger SBP-type profile. 147 223 IPR004333 GO:0003677
Adu06g00558 1006 SUPERFAMILY SBT domain 148 227 IPR036893 GO:0003677|GO:0005634
Adu06g00558 1006 Gene3D - 749 901 IPR036770 -
Adu06g00558 1006 MobiDBLite consensus disorder prediction 299 325 - -
Adu06g00558 1006 MobiDBLite consensus disorder prediction 352 376 - -
Adu06g00558 1006 SUPERFAMILY Ankyrin repeat 778 890 IPR036770 -
Adu06g00558 1006 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 15 1005 IPR044817 GO:0003677
Adu06g00558 1006 MobiDBLite consensus disorder prediction 63 78 - -
Adu06g00558 1006 MobiDBLite consensus disorder prediction 61 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00558 Adu-Chr6 6672886 6678567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00558 1 1006 SBP-box Gene Family AT3G60030 55.425 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Adu06g00558 SBP 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00558 - - gmx:100814273 1563.13