Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00553 ATGGCGGGGTCGGGAAAGATTATAGCTGCTGTTGTTTCAATTCTACTTGTAGTAGGAGTTGTTGTTGGTGCCGTGGTGGTTGTGAACAACAACGGCAGCGGCAACAATGGAGGAGAGTTGAAGACGTCGAACAAGGCGGTGAGCGCAGTGTGTCAAAGCGCCGATGATCAGAAGCTCTGCCACGACGTGCTGACACCTGTGAACACATCAAATCCCAAGGACTACATCACGCAGGTGGTGAAATTCTCCACGGAAAGCGTGTTGAAAGCCCTTAACATGAGCGACAGGCTCATGGTGGAGAGCGTCGCCAACGGCACCAGCGACGGAGGCGTCAAGATGGCTCTGGACGACTGCAAAGACCTCTTGCAATCGGCGATCCACGAGCTTGAGGCCTCCGGCGTGTTTGTGAACAGCCAATCGCTTCCGGAAGTGTTCACAAACAGTGCCGAGCTGAAGAACTGGTTGGGCGCCGTGATCGCCTACCAGCAATCTTGCCTTGACGGGTTCGACACCGATGGGGAGAAGCATGTCCAAGGTCAGTTGCAGAGCGAGAGCTTGGATAGCGTGATGAAGCTCACCGCCTTGGCCCTTGATGTTGTCGCCGGTGTCTCTAAGGTTCTGTCTGAGTTAGGGCTCAACTTGACCAACAGGCCCGTTCGTCGCCTCCTTGGGCTTGATCAATATGGTTTCCCAACATGGTTGTACCCTCATGACCGTAAGCTCATCAATGAGGCCAGCCAGGGTTCCATTGTCCCGAACGCTGTTGTTGCCAAGGATGGTAGTGGCCAGTACAAGACTGTTTTGGAAGCCATTAATGCTTACCCCAAGAAACACCAAGGCAGGTGGGTTATCTATGTTAAGGCTGGAATCTACGACGAGTACATCACCGTCGACAAGGCCAAGCGTAACATCTACATGTACGGTGATGGCCCCGCCAAAACCATCATCACCGGTCGCAAGAACTTCGCTGAAGGTGTCAAGACTATGAGGACTGCCACCTTCACCACCGTTGCTGAGGGATTCATTGCTAAGGGTATTGCTTTTGAGAACACCGCCGGTCCAGGTGGACACCAAGCAGTGGCCCTCCGCGTGATGGGTGACCGCTCAGCCTTCTTCGACTGCGCGTTCCGTGGCCACCAAGATACCTTGTACGCCCATGCTCACCGTCAGTTCTATCGCAACTGCGAAATTAGTGGCACCATTGACTTCATCTTCGGCTACGCTTCAACCTACATCCAGAACTCCAAGATCATCGTGAGGAAGCCCAAGGCAAACCAGCAGAACATCATCGTTGCTGACGGTACCGACCAGAAGAACATGCCATCGGGTGTAGTCCTCCATAACTGCCAGATCTTGGCAGAGCCAAGCCTGGAAGCAGAGAACGGGAAGGTGAGAACCTTCTTGGCAAGACCATGGAAGGCGTTCTCGAGGGCAGTGTTCATTGAGAACACCATCGGTGGCTTCATCAACAAGGAGGGTTACATTCCATGGTCAGCAGCTGCCCCTAACACCGAGCACGCATACTTTGGTGAGTTCGGAAACATTGGAGCTGGTGCTGATGCTTCTGGAAGGGTCAAGTGGGCCAAGGGTCTTATCTCCAAGGATGAGGCTTCTCAGTTCACTGTTGACAATTTCCTCCAAGCTAACTCATGGTTGCACGACACTGGTTTTCCTTTTGATGCTAGCTTCACCAAGAACTAA 1701 0.5303 MAGSGKIIAAVVSILLVVGVVVGAVVVVNNNGSGNNGGELKTSNKAVSAVCQSADDQKLCHDVLTPVNTSNPKDYITQVVKFSTESVLKALNMSDRLMVESVANGTSDGGVKMALDDCKDLLQSAIHELEASGVFVNSQSLPEVFTNSAELKNWLGAVIAYQQSCLDGFDTDGEKHVQGQLQSESLDSVMKLTALALDVVAGVSKVLSELGLNLTNRPVRRLLGLDQYGFPTWLYPHDRKLINEASQGSIVPNAVVAKDGSGQYKTVLEAINAYPKKHQGRWVIYVKAGIYDEYITVDKAKRNIYMYGDGPAKTIITGRKNFAEGVKTMRTATFTTVAEGFIAKGIAFENTAGPGGHQAVALRVMGDRSAFFDCAFRGHQDTLYAHAHRQFYRNCEISGTIDFIFGYASTYIQNSKIIVRKPKANQQNIIVADGTDQKNMPSGVVLHNCQILAEPSLEAENGKVRTFLARPWKAFSRAVFIENTIGGFINKEGYIPWSAAAPNTEHAYFGEFGNIGAGADASGRVKWAKGLISKDEASQFTVDNFLQANSWLHDTGFPFDASFTKN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00553 566 SUPERFAMILY Pectin lyase-like 253 560 IPR011050 -
Adu06g00553 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 197 IPR035513 -
Adu06g00553 566 CDD PMEI-like_3 49 205 - -
Adu06g00553 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 203 IPR035513 -
Adu06g00553 566 PANTHER PECTINESTERASE 7 563 - -
Adu06g00553 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 199 IPR006501 GO:0004857
Adu06g00553 566 PANTHER PECTINESTERASE 7 563 - -
Adu06g00553 566 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Adu06g00553 566 Pfam Plant invertase/pectin methylesterase inhibitor 46 198 IPR006501 GO:0004857
Adu06g00553 566 SMART PMEI_2 42 199 IPR006501 GO:0004857
Adu06g00553 566 Pfam Pectinesterase 253 548 IPR000070 GO:0030599|GO:0042545
Adu06g00553 566 Gene3D - 247 563 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00553 Adu-Chr6 6595553 6597688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00553 5 558 Carbohydrate Esterase AT3G62170 38.136 2.80e-127 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00553 K01051 - gmx:100808559 759.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00553 06 6595553 6597688 Adu09g01015 09 18622143 18625537 PCT
Adu09g01017 09 18688128 18689940 Adu06g00553 06 6595553 6597688 PCT