Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00550 ATGGACCATGAGACAGTTCCATACTTCAGGCTGTTCTCGTTTGCAGAGTCCACTGACATCTTGTTGATGATTGTTGGGACCATTGCGGCCATTGGAAATGAGGTGCTATGTTGGATAGTGACAGGGGAAAGACAAGCTGTAAGAATAAGGGGTTTGTACTTGAAGACTATTCTAAGACAAGATATTGCTTTCTTTTATAAAGAGACAAACACTGGTGAGGTCATAGGTAGAATCTCAGATATTCATGGCAATATAAAGTTGAGGGATGTCTATTTCAGTTATCCGGCCAGACCCGAGGAGCTGATATTCAATGGATTCTCTCTGCATATTCCAAGTGACACAACTGCGGCTTTAGTAGGACAAAGTGGAAGTGAGAAGTCCACAGTTATCAGTTTGATAGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATTAACATTAGAGAATTTCAGGTTAGATGGATAAGAGGAAAAGTTGGCCTTGTCAGCCAGGAGCCAGTGTTGTTTGCATCTAGCATCAAGGATAACATTGCTTACGGAAAGGAGGGAGCAACAATTGAAGAGATTAAAGTTGCAATTAAACTTGCAAATGCTGCTGATTTCATTGATACACTGCCACAGGGATTGGAAACAATGGTTGGTGAGCATGGAACACAACTATCTGATGGACAGAAGCAACGCATTGCCATTGCAAGAGCTATCCTAAAAGATCCAAGGATTTTGCTTCTAGATGAAGCCACAAGTGCACTTCATGCAGAATCTGAAAGAATAGTGCAAGAGGCCCTAGATAGGATCATGATCAACAGAACTACTGTTGTTGTAGCGCACCGCCTAAGCATCGTGTGGAATGCAGACATGATTGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGTAAAGAATCCCGAAGGAGCTTACTCTCAGCTTATACGTCTGCAAGAGGTAACAGAGGATTCATTAAAGAATGCAGACAACCAAAACCTGAACTCTCAAGAAGTCAAAAGTGGTCATTTCAAAGATCAGAATTATCTGTTGGCAGAAGTAGCCACTGCTCAACTTCCATCGGCTTACCTACAAGAGCTAACATCTTTGATCCTGAAGTTGAAACTCCTAGAGAAGAGAATGTACCATCACAAGAGGTTCCACTATGGTGGCTTTTTTCCCTTAACAAACCAGAGACTCTAG 1197 0.4177 MDHETVPYFRLFSFAESTDILLMIVGTIAAIGNEVLCWIVTGERQAVRIRGLYLKTILRQDIAFFYKETNTGEVIGRISDIHGNIKLRDVYFSYPARPEELIFNGFSLHIPSDTTAALVGQSGSEKSTVISLIERFYDPQAGEVLIDGINIREFQVRWIRGKVGLVSQEPVLFASSIKDNIAYGKEGATIEEIKVAIKLANAADFIDTLPQGLETMVGEHGTQLSDGQKQRIAIARAILKDPRILLLDEATSALHAESERIVQEALDRIMINRTTVVVAHRLSIVWNADMIAVIHRGKMVEKVKNPEGAYSQLIRLQEVTEDSLKNADNQNLNSQEVKSGHFKDQNYLLAEVATAQLPSAYLQELTSLILKLKLLEKRMYHHKRFHYGGFFPLTNQRL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00550 398 Gene3D ABC transporter type 1, transmembrane domain 5 80 IPR036640 GO:0005524|GO:0016021
Adu06g00550 398 Gene3D ABC transporter type 1, transmembrane domain 328 361 IPR036640 GO:0005524|GO:0016021
Adu06g00550 398 CDD ABC_MTABC3_MDL1_MDL2 85 317 - -
Adu06g00550 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 317 IPR027417 -
Adu06g00550 398 Pfam ABC transporter 104 252 IPR003439 GO:0005524
Adu06g00550 398 SUPERFAMILY ABC transporter transmembrane region 21 80 IPR036640 GO:0005524|GO:0016021
Adu06g00550 398 Pfam ABC transporter transmembrane region 21 80 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Adu06g00550 398 PANTHER - 35 79 - -
Adu06g00550 398 PANTHER - 79 330 - -
Adu06g00550 398 Gene3D - 81 318 IPR027417 -
Adu06g00550 398 PANTHER - 4 35 - -
Adu06g00550 398 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 85 321 IPR003439 GO:0005524
Adu06g00550 398 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 4 35 - -
Adu06g00550 398 SMART AAA_5 112 307 IPR003593 -
Adu06g00550 398 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 35 79 - -
Adu06g00550 398 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 79 330 - -
Adu06g00550 398 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 81 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00550 Adu-Chr6 6586287 6588104 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00550 20 75 Calmodulin-binding Proteins AT2G36910 37.931 4.50e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00550 K05658 - gmx:100802547 417.927