Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00533 ATGTTCAACTCCAGCCGCAAAGGGATGACAAGAAGCTCCTCCTTGTTGCATGTGAATAAGGATATTGGTGAGCTGGTATGGGAAAATGGTGAAGTTAAAGTGCAAGGAAGAGGAGCAGCAGTGGAAGAAAGAGCAGCAAAGTTAGACAGATTTTACTGCTCCTCAATTTTGGATCAAAGCAAGAAGCAGATCCAACAAGGATGTTCAAACTTCAAACTCATTAGTAATACATATTCCTCCTCCTTATCAGAACAGTGCAAGAAACCAAGAATAATAGATTTTTCAGGTTCAGCACAAGCAAAAACAAAATCACACACACTACAGCACTTGGGTACTTGCAATAATAATAATAATAATAATAATAATAATAATAATCAGAGGACATCATTAGGAGGAGGAATGGTGAACTTCCCAAACTTCTTGGTTCCTTCACTCTTCCTCAACAAATCTTCTTCTTCTGCTGCTGCTGCCACTAGTAGTAAAGGTCATGATCATTCATCTGTGGTGATTGATTCTTCTAATAATAACAAAGCAGCAACACAAGAACTCAAAGAAACACCTTTTCATCAGGTACAACCACTTGATCAACACTCTCATGGTCAAAAACTATATCACGGAGCCTCATCAAGTTCAGCATCACCACCACCACCTAATAATAATATTGAGCAACACTTGGTAGTAGCATCTTCTCCTGTAAGCTCTATTGGAGCCTCAAACGACCCTGACATTGGTATTATGAGGAAGCAGCATGAGGAATACAGCAACATCACTGATCATGATCATGATCATGATGACACCACAACATATATAAGTGATGATGATGATGAAGAAACAGAAGATGTAATAATAGCAAAGGAAACACCAGCTGCAGGTACCAGAGCCAAGAGAAGCAGGGACCCAGAGGTTCATAATTTATCTGAAAGGGTCAACAAGAGGATTCATACATTGAAAGAACTCATACCCAATTGCAATAAGATTGATAAAGCTTCAACTCTTGATGATGCAATTGACTATCTTAAGACCCTGAAGCTTCAGTTGCAGATAATGTCAATGGGGAGAGGACTTTGCATGCCATTGATGATGTTACATAATCATCATAATCAGTTAATGTGTTATAGGCCATCATCAGGCACAGGCATTCCCCATCAAAACATGTTTGATGGTTTCTTCAACCAAATGAGGCCTATGATTATACCACCATCACCACCTTTCATCAATCCGACTCCACCACTTGCGCCATTGTCAATCGCCAATTCTTCCAGTCGTGATGTCTCACATGTTCAAGCAATCAATAATGGTGATCAGGTTTCCCTTCACCAACACACAACTAGCAGCAGCTACCCCTTCTATTTTCCCACAATCATCAATCAGGAGGAAAAGAATAATTATGGAATGGAATAG 1401 0.3969 MFNSSRKGMTRSSSLLHVNKDIGELVWENGEVKVQGRGAAVEERAAKLDRFYCSSILDQSKKQIQQGCSNFKLISNTYSSSLSEQCKKPRIIDFSGSAQAKTKSHTLQHLGTCNNNNNNNNNNNNQRTSLGGGMVNFPNFLVPSLFLNKSSSSAAAATSSKGHDHSSVVIDSSNNNKAATQELKETPFHQVQPLDQHSHGQKLYHGASSSSASPPPPNNNIEQHLVVASSPVSSIGASNDPDIGIMRKQHEEYSNITDHDHDHDDTTTYISDDDDEETEDVIIAKETPAAGTRAKRSRDPEVHNLSERVNKRIHTLKELIPNCNKIDKASTLDDAIDYLKTLKLQLQIMSMGRGLCMPLMMLHNHHNQLMCYRPSSGTGIPHQNMFDGFFNQMRPMIIPPSPPFINPTPPLAPLSIANSSSRDVSHVQAINNGDQVSLHQHTTSSSYPFYFPTIINQEEKNNYGME 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00533 466 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 353 IPR036638 GO:0046983
Adu06g00533 466 Pfam Helix-loop-helix DNA-binding domain 307 342 IPR011598 GO:0046983
Adu06g00533 466 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Adu06g00533 466 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 443 - -
Adu06g00533 466 MobiDBLite consensus disorder prediction 192 222 - -
Adu06g00533 466 MobiDBLite consensus disorder prediction 256 277 - -
Adu06g00533 466 PANTHER TRANSCRIPTION FACTOR PIF3 1 443 IPR044273 GO:0003700|GO:0006355
Adu06g00533 466 SMART finulus 304 348 IPR011598 GO:0046983
Adu06g00533 466 Gene3D - 290 343 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00533 Adu-Chr6 6422878 6424634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00533 236 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 44.697 2.10e-23 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu06g00533 HLH 3.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00533 K12126 - gmx:100804665 169.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00533 06 6422878 6424634 Adu09g01052 09 19782078 19784349 PCT